Here is a list of all class members with links to the classes they belong to:

- m -

• m_ : mean_and_stddev , EdwardsLippertIterator
• m_2H : RNPxlReportRow
• m_3H : RNPxlReportRow
• m_4H : RNPxlReportRow
• m_features : MockMRMFeature
• m_H : RNPxlReportRow
• m_intensity : MockFeature , MockMRMFeature
• m_intensity_vec : MockFeature
• m_library_intensities : MockTransitionGroup
• m_native_ids : MockTransitionGroup
• m_rt : MockFeature , MockMRMFeature
• m_rt_vec : MockFeature
• m_size : MockTransitionGroup
• m_sn_value : MockSignalToNoise
• MAGNETIC_DEFLECTION : Instrument
• magnetic_field_strength_ : MassAnalyzer
• magnetic_fs_ : MassAnalyzerVisualizer
• main() : TOPPBase
• main_() : TOPPBase , TOPPRNPxl , TOPPRNPxlXICFilter
• main_data_structure : ProcessData
• main_iterator : ProcessData
• mainlayout_ : BaseVisualizerGUI
• mainWindowNeedsUpdate() : TOPPASScene
• major_version_ : MascotXMLHandler
• makeAxes() : Spectrum3DOpenGLCanvas
• makeAxesTicks() : Spectrum3DOpenGLCanvas
• makeConsensusFeature_() : QTClusterFinder
• makeDataAsStick() : Spectrum3DOpenGLCanvas
• makeDataAsTopView() : Spectrum3DOpenGLCanvas
• makeGridLines() : Spectrum3DOpenGLCanvas
• makeGround() : Spectrum3DOpenGLCanvas
• makeLinearRegression_() : InternalCalibration
• makePrecursorSelectionForKnownLCMSMap() : OfflinePrecursorIonSelection
• makeScanMap_() : PepXMLFile
• makeStream() : CompressedInputSource
• MALDI : IonSource , IonizationSimulation
• maldi_probabilities_ : IonizationSimulation
• MANUAL : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
• Map : Factory< FactoryProduct > , SingletonRegistry , FTPeakDetectController
• map2cvs() : QcMLFile
• map_ : INIUpdater , FeatureXMLFile , FeaFiModule< PeakType, FeatureType > , FeatureFinderAlgorithm< PeakType, FeatureType > , FeatureFinderAlgorithmPicked< PeakType, FeatureType > , FeatureFinderAlgorithmSH< PeakType, FeatureType > , TOPPASResources , PeakIntensityPredictor
• map_as_2d_disabled_ : TOPPViewOpenDialog
• map_const_iterator : SparseVector< Value >
• map_index_ : GridFeature , FeatureHandle
• map_iterator : SparseVector< Value >
• map_label_ : FeatureDeconvolution
• map_label_inverse_ : FeatureDeconvolution
• map_points_ : ConvexHull2D
• map_precursor_to_chrom_idx_cache : SpectraViewWidget
• map_unitid_to_meta_data_ : MzTab
• map_unitid_to_peptide_data_ : MzTab
• map_unitid_to_protein_data_ : MzTab
• map_unitid_to_small_molecule_data_ : MzTab
• MapAccPepType : MzTabFile
• MapAlignmentAlgorithm() : MapAlignmentAlgorithm
• MapAlignmentAlgorithmIdentification() : MapAlignmentAlgorithmIdentification
• MapAlignmentAlgorithmPoseClustering() : MapAlignmentAlgorithmPoseClustering
• MapAlignmentAlgorithmSpectrumAlignment() : MapAlignmentAlgorithmSpectrumAlignment
• MapAlignmentEvaluationAlgorithm() : MapAlignmentEvaluationAlgorithm
• MapAlignmentEvaluationAlgorithmPrecision() : MapAlignmentEvaluationAlgorithmPrecision
• MapAlignmentEvaluationAlgorithmRecall() : MapAlignmentEvaluationAlgorithmRecall
• mapExperimentToTransitionList() : MRMFeatureFinderScoring
• mapFiles2Design_() : QuantitativeExperimentalDesign
• mapIdentifications_() : ConsensusID
• MapIterator : Factory< FactoryProduct > , SingletonRegistry
• mapped_type : HashGrid< Cluster >
• mapping : MappingParam
• mapping_ : MzMLHandler< MapType > , SemanticValidator
• mapping_rules_ : CVMappings
• mapSearchEngineScoreToCvParam_() : MzTabFile
• mapSearchEngineToCvParam_() : MzTabFile
• mapSeeds2Features() : IsotopeWaveletTransform< PeakType >
• MapType : CachedmzML , FeaFiModule< PeakType, FeatureType > , FeatureFinderAlgorithm< PeakType, FeatureType > , FeatureFinderAlgorithmMRM< PeakType, FeatureType > , FeatureFinderAlgorithmPicked< PeakType, FeatureType > , FeatureFinderAlgorithmSH< PeakType, FeatureType > , SimpleSeeder< PeakType, FeatureType > , FoundProteinFunctor
• margin() : AxisWidget
• margin_ : AxisWidget , HistogramWidget , MultiGradientSelector
• marker_ions : RNPxlReportRow
• MarkerMower() : MarkerMower
• markers_ : MarkerMower
• markUnreachable() : TOPPASMergerVertex , TOPPASVertex
• marr_() : ContinuousWaveletTransformNumIntegration
• mascot_xml_ : MascotRemoteQuery
• MascotGenericFile() : MascotGenericFile
• MascotInfile() : MascotInfile
• MascotRemoteQuery() : MascotRemoteQuery
• MASCOTXML : FileTypes
• MascotXMLFile() : MascotXMLFile
• MascotXMLHandler() : MascotXMLHandler
• mass : MS1Signal , IMSIsotopeDistribution::Peak , PepXMLFile::AminoAcidModification
• mass_ : Compomer , Modification , Sample , CentroidPeak
• mass_analyzers_ : Instrument
• MASS_CHROMATOGRAM : ChromatogramSettings
• mass_container : IMSAlphabet
• mass_decomp_algorithm_ : CompNovoIdentificationBase
• mass_diff_ : ChargePair
• mass_error_ppm_ : MassTraceDetection
• mass_in_lcms_ : IntegerMassDecomposer< ValueType, DecompositionValueType >
• mass_iterator : IMSAlphabet
• mass_mapping_ : ModifierRep
• mass_separations : SILACFiltering::BlacklistEntry
• mass_separations_ : SILACFilter
• mass_shift_ : Tagging
• mass_shifts : SILACPoint
• mass_to_charge : MzTabPeptideSectionRow , MzTabSmallMoleculeSectionRow
• mass_type : IMSAlphabet , IMSElement , IMSIsotopeDistribution , ProteinIdentification::SearchParameters
• mass_type_ : MascotInfile , ProteinIdentificationVisualizer
• mass_type_fragment_ : SequestInfile
• mass_type_parent_ : SequestInfile
• mass_window_width_ : IsotopeDistributionCache , FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• MassAnalyzer() : MassAnalyzer
• MassAnalyzerVisualizer() : MassAnalyzerVisualizer
• MassDecomposition() : MassDecomposition
• MassDecompositionAlgorithm() : MassDecompositionAlgorithm
• massdev_score : OpenSwath_Scores
• massdiff : PepXMLFile::AminoAcidModification
• masse_ : EdwardsLippertIterator , SuffixArraySeqan , SuffixArrayTrypticCompressed
• masses_ : PrecursorIonSelectionPreprocessing
• masses_container : IMSIsotopeDistribution
• masses_iterator : IMSIsotopeDistribution
• masses_type : IMSAlphabet
• MassExplainer() : MassExplainer
• massMax_ : EdwardsLippertIterator
• MASSSPECTRUM : InstrumentSettings
• massTolDa_ : SuperHirnParameters
• massTolPpm_ : SuperHirnParameters
• MassTrace : FeatureFinderAlgorithmPicked< PeakType, FeatureType > , MassTrace
• MassTraceDetection() : MassTraceDetection
• MassTraces : FeatureFinderAlgorithmPicked< PeakType, FeatureType > , FeatureFinderAlgorithmPickedHelperStructs::MassTraces< PeakType >
• MassType : XTandemInfile
• MASTER_ID : LCMS , SHFeature
• match_peak_allowed_error_ : SequestInfile
• match_peak_count_ : SequestInfile
• match_peak_tolerance_ : SequestInfile
• matched_feature_list : SHFeature
• matching_peaks : TwoDOptimization::Data
• matching_peaks_ : TwoDOptimization
• matchMasses_() : TOFCalibration
• matchModification_() : PepXMLFile , PepXMLFileMascot , ProtXMLFile
• Matrix() : Matrix< Value >
• matrix_ : DistanceMatrix< Value >
• MAX : LPWrapper
• max : FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern , PeakPickerCWT::PeakArea_ , LayerStatisticsDialog::MetaStatsValue_
• max_ : DIntervalBase< D > , InRTRange< SpectrumType > , InMzRange< PeakType > , InIntensityRange< PeakType > , Histogram< ValueType, BinSizeType > , EGHModel , BiGaussModel , EmgModel , Fitter1D , GaussModel , LmaGaussModel , LmaIsotopeModel , AxisWidget
• max_AA_per_mod_per_peptide_ : SequestInfile
• max_adduct_charge_ : IonizationSimulation
• max_charge_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType > , IsotopeWavelet , IsotopeWaveletTransform< PeakType > , LayerStatisticsDialog
• max_correctly_ : PosteriorErrorProbabilityModel
• max_decomp_weight_ : CompNovoIdentificationBase
• max_diff_mz_ : QTClusterFinder
• max_diff_ppm : FeatureDistance::DistanceParams_
• max_diff_rt_ : QTClusterFinder
• max_difference : FeatureDistance::DistanceParams_
• max_distance_ : QTCluster
• max_elements_ : LayerStatisticsDialog
• max_feature_intersection_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• max_float : ParameterInformation , Param::ParamEntry
• max_fwhm_ : ElutionPeakDetection
• max_incorrectly_ : PosteriorErrorProbabilityModel
• max_int : ParameterInformation , Param::ParamEntry
• max_intensity : IDDecoyProbability::Transformation_
• max_intensity_ : FeatureDistance , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container > , LayerStatisticsDialog
• max_intensity_bin : IDDecoyProbability::Transformation_
• max_inter_scan_distance : ProcessData
• max_internal_cleavage_sites_ : SequestInfile
• max_isotope_ : ExtendedIsotopeFitter1D , ExtendedIsotopeModel , IsotopeFitter1D , IsotopeModel , LmaIsotopeFitter1D , LmaIsotopeModel , ModelFitter< PeakType, FeatureType > , CompNovoIdentificationBase , IsotopeDistribution
• max_iteration_ : PrecursorIonSelection , LevMarqFitter1D , ModelFitter< PeakType, FeatureType > , OptimizePick , TwoDOptimization
• max_iterations_ : TraceFitter< PeakType >
• max_missing_trace_peaks_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• max_mods_per_peptide_ : ModificationDefinitionsSet , SequestInfile
• max_mz_ : CompNovoIdentificationBase
• max_mz_cutoff_ : IsotopeWaveletTransform< PeakType >
• max_neutrals_ : MassExplainer
• max_num_peaks_considered_ : MapAlignmentAlgorithmPoseClustering
• max_num_peaks_per_pattern_ : IsotopeWaveletTransform< PeakType >
• max_number_aa_per_decomp_ : CompNovoIdentificationBase
• max_number_pivot_ : CompNovoIdentificationBase
• max_occurences_ : ModificationDefinition
• max_peak : FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
• max_peak_distance_ : TwoDOptimization
• max_pep_lens_ : SequestOutfile
• max_precursor_charge_ : XTandemInfile
• max_quality_ : LayerStatisticsDialog
• max_rt : FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
• max_rt_span_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• max_scan_size_ : IsotopeWaveletTransform< PeakType >
• max_score : IDDecoyProbability::Transformation_
• max_score_ : PrecursorIonSelection
• max_size() : ConstRefVector< ContainerT >
• max_span_ : MassExplainer
• max_subscore_number_ : CompNovoIdentificationBase
• MAX_TIME : LogStreamBuf
• max_trace : FeatureFinderAlgorithmPickedHelperStructs::MassTraces< PeakType >
• max_trace_length_ : ElutionPeakDetection
• max_valid_evalue_ : XTandemInfile
• maxBound() : Histogram< ValueType, BinSizeType >
• maxFeatureChrg_ : SuperHirnParameters
• maxFeatureMZ_ : SuperHirnParameters
• maximal_mz_measurement_limit_ : IonizationSimulation
• maxInterScanRetentionTimeDistance_ : SuperHirnParameters
• MaxLikeliFitter1D() : MaxLikeliFitter1D
• maxPosition() : DIntervalBase< D >
• maxPositive() : DPosition< D, TCoordinateType >
• maxptmsize_ : InspectInfile
• maxTR_ : SuperHirnParameters
• maxValue() : Histogram< ValueType, BinSizeType >
• maxX() : DIntervalBase< D >
• maxY() : DIntervalBase< D >
• MAY : CVMappingRule
• MD5 : SourceFile
• me_ : IsotopeWavelet
• mean : SignalToNoiseEstimator< Container >::GaussianEstimate , mean_and_stddev , BasicStatistics< RealT >
• mean_ : BasicStatistics< RealT > , IsotopeModel , LmaIsotopeFitter1D , LmaIsotopeModel , BackgroundIntensityBin
• mean_and_stddev() : mean_and_stddev
• mean_residuals_ : LinearRegression
• Measure : IDMapper
• measure_ : IDMapper
• MEASURE_DA : IDMapper
• MEASURE_PPM : IDMapper
• measurement_start_ : Spectrum2DCanvas , SpectrumCanvas
• measurement_start_point_ : Spectrum1DCanvas
• medium_channel_arginine_label_ : SILACLabeler
• MEDIUM_CHANNEL_ID_ : O18Labeler
• medium_channel_label_ : ICPLLabeler
• medium_channel_lysine_label_ : SILACLabeler
• MEDIUM_FEATURE_MAPID_ : ICPLLabeler , SILACLabeler
• MEMBRANE : IonSource
• MEMBRANESEPARATOR : IonSource
• merge() : Param , QcMLFile
• mergeAllChannelFeatures_() : SILACLabeler
• MergeBlocks : SpectraMerger
• mergeConsensusMaps_() : QuantitativeExperimentalDesign
• mergeFailed() : TOPPASMergerVertex
• mergeFeatureMaps_() : QuantitativeExperimentalDesign
• mergeFeatures() : IsotopeWaveletTransform< PeakType > , MS1FeatureMerger
• mergeFeatures_() : ICPLLabeler , ITRAQLabeler , O18Labeler , SILACLabeler
• mergeIDFiles_() : QuantitativeExperimentalDesign
• mergeIntoLayer() : Spectrum2DCanvas
• mergeMS2Fragments() : ClusteredMS2ConsensusSpectrum
• mergeOverlappingWindows_() : InclusionExclusionList
• mergePartitions() : SVMWrapper
• mergeProteinAccessions_() : BaseLabeler
• mergeProteinIdentificationsMaps_() : BaseLabeler
• mergeSpectra_() : SpectraMerger
• mergeSpectraBlockWise() : SpectraMerger
• mergeSpectraPrecursors() : SpectraMerger
• MESI : IonSource
• message_label_ : IDEvaluationBase , TOPPASBase , TOPPViewBase
• message_level : LPWrapper::SolverParam
• messageReady() : TOPPASScene
• meta : MzMLHandler< MapType >::BinaryData
• meta_ : MetaInfoInterface
• meta_array_stats_ : LayerStatisticsDialog
• META_DATA : DataFilters
• meta_id_descs_ : MzDataHandler< MapType >
• meta_indices_ : DataFilters
• meta_ms_experiment_ : SpectrumAccessOpenMSCached
• meta_name : DataFilters::DataFilter
• meta_stats_ : LayerStatisticsDialog
• metabuttons_ : MetaInfoVisualizer
• metadata_only_ : FeatureFileOptions , PeakFileOptions
• MetaDataBrowser() : MetaDataBrowser
• metadataDatabaseDialog() : TOPPViewBase
• metadataFileDialog() : TOPPViewBase
• MetaInfo() : MetaInfo
• MetaInfoDescription() : MetaInfoDescription
• metainfodescription_name_ : MetaInfoDescriptionVisualizer
• MetaInfoDescriptionVisualizer() : MetaInfoDescriptionVisualizer
• MetaInfoInterface() : MetaInfoInterface
• metainfoptr_ : MetaInfoVisualizer
• MetaInfoRegistry() : MetaInfoRegistry
• MetaInfoVisualizer() : MetaInfoVisualizer
• MetaIterator_ : LayerStatisticsDialog
• metalabels_ : MetaInfoVisualizer
• metaPasses_() : DataFilters
• metaRegistry() : MetaInfoInterface
• MetaStatsValue_() : LayerStatisticsDialog::MetaStatsValue_
• metavalue_key_ : HasMetaValue< MetaContainer >
• metaValueExists() : MetaInfoInterface
• method_ : Normalizer
• method_of_combination_ : AcquisitionInfo
• methods_ : HasActivationMethod< SpectrumType >
• MGF : FileTypes
• MICROCHANNELPLATEDETECTOR : IonDetector
• MIN : LPWrapper
• min : LayerStatisticsDialog::MetaStatsValue_
• min_ : DIntervalBase< D > , InRTRange< SpectrumType > , InMzRange< PeakType > , InIntensityRange< PeakType > , Histogram< ValueType, BinSizeType > , EGHModel , BiGaussModel , EmgModel , Fitter1D , GaussModel , LmaGaussModel , LmaIsotopeModel , AxisWidget
• min_aa_weight_ : CompNovoIdentificationBase
• min_charge_ : LayerStatisticsDialog
• min_detect_ : DetectabilitySimulation
• min_element_ : DistanceMatrix< Value >
• min_elements_ : LayerStatisticsDialog
• min_float : ParameterInformation , Param::ParamEntry
• min_fwhm_ : ElutionPeakDetection
• min_int : ParameterInformation , Param::ParamEntry
• min_intensity_ : LayerStatisticsDialog
• min_isotope_fit_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• min_mz_ : CompNovoIdentificationBase
• min_pep_ids_ : PrecursorIonSelection
• min_quality_ : LayerStatisticsDialog
• min_required_elements_ : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
• min_rt_span_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• min_run_occur_ : MapAlignmentAlgorithmIdentification
• min_sample_rate_ : MassTraceDetection
• min_score : IDDecoyProbability::Transformation_
• min_spacing_ : IsotopeWaveletTransform< PeakType >
• min_spectra_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• min_trace_length_ : ElutionPeakDetection , MassTraceDetection
• min_trace_score_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• minBound() : Histogram< ValueType, BinSizeType >
• minFeatureChrg_ : SuperHirnParameters
• minFeatureMZ_ : SuperHirnParameters
• minimal_mz_measurement_limit_ : IonizationSimulation
• MINIMAL_PEP_PROPHET_THERSHOLD : LCMS
• minimal_protein_list_accessions_ : PSProteinInference
• Minimum_() : ConsensusID
• minIntensity_ : SuperHirnParameters
• minNbClusterMembers_ : SuperHirnParameters
• minNegative() : DPosition< D, TCoordinateType >
• minor_version_ : MascotXMLHandler
• minPosition() : DIntervalBase< D >
• minPositive() : DPosition< D, TCoordinateType >
• minTR_ : SuperHirnParameters
• minValue() : Histogram< ValueType, BinSizeType >
• minX() : DIntervalBase< D >
• minY() : DIntervalBase< D >
• mip_gap : LPWrapper::SolverParam
• mirror_mode_ : Spectrum1DCanvas
• mirrorModeActive() : Spectrum1DCanvas
• mismatchscore_ : MapAlignmentAlgorithmSpectrumAlignment
• missed_cleavages : ProteinIdentification::SearchParameters
• missed_cleavages_ : MascotInfile , EnzymaticDigestion , PeptideEvidence , ProteinIdentificationVisualizer
• MISSING_PARAMETERS : TOPPBase
• MissingInformation() : MissingInformation
• ml1_ : AcqusHandler
• ml1s_ : TOFCalibration
• ml2_ : AcqusHandler
• ml2s_ : TOFCalibration
• ml3_ : AcqusHandler
• ml3s_ : TOFCalibration
• MockFeature() : MockFeature
• MockMRMFeature() : MockMRMFeature
• MockSignalToNoise() : MockSignalToNoise
• MockTransitionGroup() : MockTransitionGroup
• mod : MzTabUnitIdMetaData
• mod_ : ModificationDefinition
• mod_combinations : ModificationMassesResult
• mod_def_set_ : OMSSAXMLFile , XTandemXMLFile
• mod_formula_idx : ModificationMassesResult
• mod_identifier_ : MzTabModification
• MOD_LIST : MS2Info
• mod_masses : ModificationMassesResult
• mod_probability_method : MzTabUnitIdMetaData
• mode_ : HasScanMode< SpectrumType >
• model2D_ : ModelFitter< PeakType, FeatureType >
• model_ : SVMWrapper , TransformationDescription , PSLPFormulation , Instrument , InstrumentVisualizer
• model_data_ : EnzymaticDigestion
• model_desc_ : FeatureXMLFile , Feature
• model_deviation_ : SILACFilter
• model_type_ : TransformationXMLFile , TransformationDescription
• ModelDescription() : ModelDescription< D >
• ModelFitter() : ModelFitter< PeakType, FeatureType >
• modifiable : LayerData
• Modification() : Modification
• modification_ : Residue , UnimodXMLHandler
• modification_names_ : ModificationsDB
• modification_output_method_ : SuffixArrayPeptideFinder
• modification_table_ : ModifierRep
• modificationAA_ : TaggingVisualizer , ModificationVisualizer
• ModificationDefinition() : ModificationDefinition
• ModificationDefinitionsSet() : ModificationDefinitionsSet
• modificationmass_ : ModificationVisualizer , TaggingVisualizer
• modificationname_ : ModificationVisualizer , TaggingVisualizer
• modifications : LightPeptide , Peptide , MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow , MzTabPeptideSectionRow
• modifications_ : UnimodXMLHandler , OMSSAXMLFile , XTandemInfile
• modifications_per_peptide_ : InspectInfile
• ModificationsDB() : ModificationsDB
• modificationspecificity_ : TaggingVisualizer , ModificationVisualizer
• modificationStatus_() : SpectrumCanvas
• ModificationType : MRMFeatureFinderScoring
• ModificationVisualizer() : ModificationVisualizer
• modified : LayerData , ParamEditorDelegate , ParamEditor
• modified_ : ParamEditor
• modified_peptides_ : MascotXMLHandler
• modified_residues_ : ResidueDB
• ModifierRep() : ModifierRep
• modify_strings_ : SVOutStream
• modifyStrings() : SVOutStream
• mods : Peptide
• mods_ : MascotInfile , PepNovoInfile , MSQuantifications::Assay , ModificationsDB
• mods_and_keys_ : PepNovoInfile
• mods_map_ : OMSSAXMLFile
• mods_to_num_ : OMSSAXMLFile
• module_ : IntensityLess< FeaFiModuleType > , MzIterator< FeaFiModuleType > , RtIterator< FeaFiModuleType > , IntensityIterator< FeaFiModuleType >
• monitorFileChanged_() : FileWatcher
• MONO : WeightWrapper
• mono_mass : MS2Info
• mono_mass_ : ResidueModification , UnimodXMLHandler
• mono_mass_delta : Peptide::Modification
• MONO_MZ : SHFeature , MS2Info
• MONO_MZ_END : SHFeature
• MONO_MZ_ORIGINAL : SHFeature
• MONO_MZ_START : SHFeature
• mono_weight_ : Element , Residue
• MONOISOTOPIC : ProteinIdentification , XTandemInfile
• monoisotopic_mass_known_ : LmaIsotopeFitter1D
• monoisotopic_mz_ : ModelFitter< PeakType, FeatureType > , LmaIsotopeModel , LmaIsotopeFitter1D , ExtendedIsotopeFitter1D , IsotopeModel , ExtendedIsotopeModel
• MorphologicalFilter() : MorphologicalFilter
• mouse_move_begin_ : Spectrum3DOpenGLCanvas
• mouse_move_end_ : Spectrum3DOpenGLCanvas
• mouseDoubleClickEvent() : TOPPASToolVertex , TOPPASEdge , TOPPASTabBar , EnhancedTabBar , TOPPASInputFileListVertex , TOPPASMergerVertex , TOPPASVertex , MultiGradientSelector , Spectrum2DCanvas
• mouseMoveEvent() : MultiGradientSelector , Spectrum2DCanvas , TOPPASTreeView , HistogramWidget , Spectrum3DOpenGLCanvas , Spectrum1DCanvas , TOPPASVertex
• mousePressEvent() : TOPPASTreeView , ColorSelector , Spectrum2DCanvas , Spectrum3DOpenGLCanvas , HistogramWidget , MultiGradientSelector , Spectrum1DCanvas , TOPPASVertex
• mouseReleaseEvent() : HistogramWidget , Spectrum3DOpenGLCanvas , MultiGradientSelector , TOPPASVertex , Spectrum2DCanvas , Spectrum1DCanvas
• move() : Annotation1DDistanceItem , Annotation1DPeakItem , Annotation1DTextItem , Annotation1DItem
• moveCurrentItem() : TOPPASInputFilesDialog
• moveMzDown_() : SimpleExtender< PeakType, FeatureType >
• moveMzUp_() : SimpleExtender< PeakType, FeatureType >
• moveNewEdgeTo_() : TOPPASVertex
• moveRtDown_() : SimpleExtender< PeakType, FeatureType >
• moveRtUp_() : SimpleExtender< PeakType, FeatureType >
• moveSelectedItems() : TOPPASScene
• moving_annotations_ : Spectrum1DCanvas
• moving_splitter_ : HistogramWidget
• MOVINGBELT : IonSource
• MOVINGWIRE : IonSource
• mp_ : SvmTheoreticalSpectrumGenerator
• MPI : IonSource
• mQ_() : TOFCalibration
• mQAv_() : TOFCalibration
• MRMDecoy() : MRMDecoy
• MRMFeature() : MRMFeature
• mrmfeature_ : MRMFeatureOpenMS
• MRMFeatureFinderScoring() : MRMFeatureFinderScoring
• MRMFeatureListType : MRMTransitionGroup< SpectrumType, TransitionType >
• MRMFeatureOpenMS() : MRMFeatureOpenMS
• MRMFragmentSelection() : MRMFragmentSelection
• mrmscore_ : MRMFeatureFinderScoring
• MRMTransitionGroup() : MRMTransitionGroup< SpectrumType, TransitionType >
• MRMTransitionGroupPicker() : MRMTransitionGroupPicker
• MRMTransitionGroupType : MRMFeatureFinderScoring
• ms1FeatureClustering() : SuperHirnParameters
• ms1FeatureClustering_ : SuperHirnParameters
• MS1FeatureMerger() : MS1FeatureMerger
• ms1FeatureMergingTrTolerance_ : SuperHirnParameters
• MS1LABEL : MSQuantifications
• ms1PeakAreaTrResolution_ : SuperHirnParameters
• MS1SPECTRUM : InstrumentSettings
• ms1TRResolution_ : SuperHirnParameters
• MS2 : FileTypes
• MS2_MZ_TOLERANCE : MS2ConsensusSpectrum
• MS2_SCANS : SHFeature
• MS2_TYPE_TAG : MS2Info
• MS2ConsensusSpectrum() : MS2ConsensusSpectrum
• MS2Feature() : MS2Feature
• MS2File() : MS2File
• MS2Fragment() : MS2Fragment
• MS2FragmentPeaks : MS2ConsensusSpectrum
• MS2Info() : MS2Info
• MS2LABEL : MSQuantifications
• MS2Scans : ClusteredMS2ConsensusSpectrum
• MS2TraceFeature : SHFeature
• ms_experiment_ : SpectrumAccessOpenMS
• ms_file_ : MzTabSpectraRef
• ms_file_format : MzTabUnitIdMetaData
• ms_file_id_format : MzTabUnitIdMetaData
• ms_file_location : MzTabUnitIdMetaData
• ms_level : SpectrumMeta
• ms_level_ : MSSpectrum< PeakT >
• ms_levels_ : PeakFileOptions , MSExperiment< PeakT, ChromatogramPeakT >
• MSChromatogram() : MSChromatogram< PeakT >
• MSChromatogramType : SpectrumAccessOpenMS
• msd_group : ProteinResolver::PeptideEntry , ProteinResolver::ProteinEntry
• msd_groups : ProteinResolver::ISDGroup
• msds : ProteinResolver::ResolverResult
• MSExperiment() : MSExperiment< PeakT, ChromatogramPeakT >
• MSExperimentType : SpectrumAccessOpenMSCached , SpectrumAccessOpenMS
• msFilter_() : MapAlignmentAlgorithmSpectrumAlignment
• MsInspectFile() : MsInspectFile
• MSNSPECTRUM : InstrumentSettings
• MSP : FileTypes
• MSPeak() : MSPeak
• MSPFile() : MSPFile
• msq_ : MzQuantMLHandler
• MSQuantifications() : MSQuantifications
• MSSim() : MSSim
• MSSpectrum() : MSSpectrum< PeakT >
• MSSpectrumType : SpectrumAccessOpenMSCached , SpectrumAccessOpenMS
• mt_snr_filtering_ : ElutionPeakDetection
• mu_ : PrecursorIonSelectionPreprocessing
• multicharge_ : InspectInfile
• MULTICOLLECTOR : IonDetector
• MultiGradient() : MultiGradient
• MultiGradientSelector() : MultiGradientSelector
• MULTIPLE : ResidueModification
• MUST : CVMappingRule
• mw_ : HistogramDialog
• myLog2_() : IsotopeWavelet
• myPow() : IsotopeWavelet
• myPow2_() : IsotopeWavelet
• mz : cudaHelp , IsotopeWaveletTransform< PeakType >::BoxElement
• MZ : MSPeak , QTClusterFinder
• mz : SILACPoint
• MZ : FeatureFinderAlgorithmMRM< PeakType, FeatureType > , StablePairFinder , ModelFitter< PeakType, FeatureType >
• mz : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >::BoxElement
• MZ : Peak2D
• MZ_ : InclusionExclusionList::IEWindow
• mz_ : PrecursorVisualizer , MascotInfile , PepXMLFile , Product
• mz_32_bit_ : PeakFileOptions
• mz_as_ppm_ : InclusionExclusionList::WindowDistance_
• MZ_begin : IsotopeWaveletTransform< PeakType >::BoxElement
• MZ_CLUSTER : ProcessData
• MZ_end : IsotopeWaveletTransform< PeakType >::BoxElement
• mz_error_mean_ : RawMSSignalSimulation
• mz_error_stddev_ : RawMSSignalSimulation
• mz_input_data_ : ModelFitter< PeakType, FeatureType >
• mz_label_ : TOPPViewBase
• mz_left_ : InPrecursorMZRange< SpectrumType >
• mz_max_ : InclusionExclusionList::WindowDistance_ , SpectraMerger::SpectraDistance_
• mz_model : Summary
• mz_peptide_separations_ : SILACFilter
• mz_position : PeakShape
• mz_positions : SILACPoint
• mz_range_ : FeatureFileOptions , PeakFileOptions
• mz_right_ : InPrecursorMZRange< SpectrumType >
• mz_score : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
• MZ_series : ProcessData
• MZ_series_ITERATOR : ProcessData
• mz_stat_ : ModelFitter< PeakType, FeatureType >
• mz_stdev : Summary
• mz_to_x_axis_ : SpectrumCanvas
• mz_tol_ : PepXMLFile
• mz_tolerance_ : IDMapper , PrecursorIonSelection
• mz_tolerance_unit_ : PrecursorIonSelection
• MZBegin() : MSSpectrum< PeakT > , IsotopeWaveletTransform< PeakType >::TransSpectrum , MSSpectrum< PeakT >
• mzClusters : MS1FeatureMerger
• mzCoord_ : BackgroundIntensityBin
• MZDATA : FileTypes
• MzDataFile() : MzDataFile
• MzDataHandler() : MzDataHandler< MapType >
• MzDataValidator() : MzDataValidator
• MZEnd() : MSSpectrum< PeakT > , IsotopeWaveletTransform< PeakType >::TransSpectrum , MSSpectrum< PeakT >
• MZIDENTML : FileTypes
• MzIdentMLFile() : MzIdentMLFile
• MzIdentMLHandler() : MzIdentMLHandler
• MzIdentMLValidator() : MzIdentMLValidator
• mzIsotopesStDev_ : ConsensusIsotopePattern
• MzIterator() : MzIterator< FeaFiModuleType >
• MZML : FileTypes
• MzMLFile() : MzMLFile
• MzMLHandler() : MzMLHandler< MapType >
• MzMLValidator() : MzMLValidator
• MZQUANTML : FileTypes
• MzQuantMLFile() : MzQuantMLFile
• MzQuantMLHandler() : MzQuantMLHandler
• MzQuantMLValidator() : MzQuantMLValidator
• MzTab() : MzTab
• MzTabDoubleList() : MzTabDoubleList
• MzTabFile() : MzTabFile
• MzTabModification() : MzTabModification
• MzTabNAAbleBase() : MzTabNAAbleBase
• MzTabProteinSectionRow() : MzTabProteinSectionRow
• MzTabSpectraRef() : MzTabSpectraRef
• MzTabStringList() : MzTabStringList
• MzTabUnitIdMetaData() : MzTabUnitIdMetaData
• mzTolPpm_ : SuperHirnParameters
• mzToXAxis() : SpectrumCanvas
• MZXML : FileTypes
• MzXMLFile() : MzXMLFile
• MzXMLHandler() : MzXMLHandler< MapType >