Here is a list of all class members with links to the classes they belong to:

- u -

• uid_ : MSQuantifications::Assay , TOPPASToolVertex
• UnableToCalibrate() : UnableToCalibrate
• UnableToCreateFile() : UnableToCreateFile
• UnableToFit() : UnableToFit
• UnaryComposeFunctionAdapter() : UnaryComposeFunctionAdapter< OP1, OP2 >
• unassigned_peptide_identifications_ : FeatureMap< FeatureT > , ConsensusMap
• UNBOUNDED : LPWrapper
• UNDEFINED : LPWrapper , PeakShape
• undo_() : DigestionVisualizer , ProductVisualizer , ProteinHitVisualizer , DocumentIdentifierVisualizer , ProteinIdentificationVisualizer , SampleVisualizer , ExperimentalSettingsVisualizer , ScanWindowVisualizer , SoftwareVisualizer , GradientVisualizer , SourceFileVisualizer , SpectrumSettingsVisualizer , HPLCVisualizer , TaggingVisualizer , InstrumentSettingsVisualizer , InstrumentVisualizer , IonDetectorVisualizer , AcquisitionInfoVisualizer , IonSourceVisualizer , MassAnalyzerVisualizer , AcquisitionVisualizer , MetaInfoDescriptionVisualizer , MetaInfoVisualizer , ContactPersonVisualizer , ModificationVisualizer , PeptideHitVisualizer , DataProcessingVisualizer , PeptideIdentificationVisualizer , PrecursorVisualizer
• undo_button_ : BaseVisualizerGUI
• undobutton_ : MetaDataBrowser
• UNEXPECTED_RESULT : TOPPBase
• unify() : SpectrumSettings
• unimod_ : MzIdentMLHandler
• unimod_accession_ : ResidueModification
• unimod_id : LightModification
• UnimodXMLFile() : UnimodXMLFile
• UnimodXMLHandler() : UnimodXMLHandler
• uniprot_id : TransitionTSVReader::TSVTransition
• unique : MzTabPeptideSectionRow
• unique_id : ConsensusMap::FileDescription
• unique_id_ : UniqueIdInterface
• uniqueid_to_index_ : UniqueIdIndexer< RandomAccessContainer >
• UniqueIdGenerator() : UniqueIdGenerator
• UniqueIdInterface() : UniqueIdInterface
• UniqueIdMap : UniqueIdIndexer< RandomAccessContainer >
• uniqueIdToIndex() : UniqueIdIndexer< RandomAccessContainer >
• Unit() : CVTerm::Unit
• unit_ : DataValue , CVTerm
• unit_accession : SemanticValidator::CVTerm
• unit_accession_att_ : SemanticValidator
• unit_name : SemanticValidator::CVTerm
• unit_name_att_ : SemanticValidator
• unitAcc : QcMLFile::QualityParameter , QcMLFile::Attachment
• united() : DRange< D >
• unitRef : QcMLFile::QualityParameter , QcMLFile::Attachment
• units : ControlledVocabulary::CVTerm
• UNKNOWN : ReactionMonitoringTransition , ResidueModification , FileTypes , Instrument , InstrumentSettings , SpectrumSettings
• UNKNOWN_CHECKSUM : SourceFile
• UNKNOWN_ENZYME : ProteinIdentification
• UNKNOWN_ERROR : TOPPBase
• UNKNOWN_LOG_LEVEL : LogStreamBuf
• UnnormalizedComparator() : UnnormalizedComparator
• unparsed : ControlledVocabulary::CVTerm
• unquote() : String
• unregister() : LogStreamNotifier
• UnregisteredParameter() : UnregisteredParameter
• unregisterStream() : StreamHandler
• unselectAll() : TOPPASScene
• UNUSED : FeatureFinderDefs
• UP : MassAnalyzer
• up_stack_ : MzQuantMLHandler
• update() : Param , QTCluster , AsymmetricStatistics< Real > , BasicStatistics< RealT >
• update_() : SourceFileVisualizer , SpectrumSettingsVisualizer , TaggingVisualizer , SparseVector< Value > , Spectrum3DCanvas , SpectrumCanvas , AcquisitionInfoVisualizer , AcquisitionVisualizer , BaseVisualizer< ObjectType > , ContactPersonVisualizer , DataProcessingVisualizer , DigestionVisualizer , DocumentIdentifierVisualizer , ExperimentalSettingsVisualizer , GradientVisualizer , HPLCVisualizer , InstrumentSettingsVisualizer , InstrumentVisualizer , IonDetectorVisualizer , IonSourceVisualizer , MassAnalyzerVisualizer , MetaInfoDescriptionVisualizer , ModificationVisualizer , PeptideHitVisualizer , PrecursorVisualizer , ProductVisualizer , ProteinHitVisualizer , SampleVisualizer , ScanWindowVisualizer , SoftwareVisualizer
• update_buffer_ : SpectrumCanvas
• update_CHRGMAP() : LCElutionPeak
• updateAxes() : SpectrumWidget
• updateBaseline() : FeatureFinderAlgorithmPickedHelperStructs::MassTraces< PeakType >
• updateBoxStates() : IsotopeWaveletTransform< PeakType >
• updateChannelMap() : ItraqConstants
• updateColor() : TOPPASEdge
• updateCombinedILP() : PSLPFormulation
• updateCurrentFeature_() : FeatureXMLFile
• updateCurrentOutputFileNames() : TOPPASToolVertex
• updateCurrentPath() : TOPPASBase , TOPPViewBase
• updateCursor_() : SpectrumCanvas
• updateEdgeColors() : TOPPASScene
• updateEditorGeometry() : ListEditorDelegate , ParamEditorDelegate
• updateEntries() : SpectraIdentificationViewWidget , SpectraViewWidget
• updateExclusionList_() : OfflinePrecursorIonSelection
• updateFeatureILPVariables() : PSLPFormulation
• updateFeatureVariant_() : ILPDCWrapper
• updateFilterBar() : TOPPViewBase
• updateGridDimension_() : HashGrid< Cluster >
• updateHoveringEdgePos() : TOPPASScene
• updateHScrollbar() : SpectrumCanvas , SpectrumWidget
• updateIntensityScale() : Spectrum3DOpenGLCanvas
• updateIsotopeMatrixFromStringList() : ItraqConstants
• updateIterativeWeightedMeanMZ() : MassTraceDetection
• updateLayer() : Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
• updateLayerBar() : TOPPViewBase
• updateMaximum() : FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
• updateMeanMZ() : MassTrace
• updateMedianMZ() : MassTrace
• updateMedianRT() : MassTrace
• updateMembers_() : PeptideAndProteinQuant , IsotopeModel , Fitter1D , FeatureFinderAlgorithmMRM< PeakType, FeatureType > , FeatureFindingMetabo , PILISCrossValidation , MRMFeatureFinderScoring , MapAlignmentAlgorithmSpectrumAlignment , SimplePairFinder , StablePairFinder , FeatureDistance , CompNovoIonScoringBase , LevMarqFitter1D , TraceFitter< PeakType > , CompNovoIdentificationBase , TwoDOptimization , FeatureDeconvolution , PeakPickerCWT , CompNovoIdentificationCID , IDMapper , LmaGaussFitter1D , PILISIdentification , PILISModel , PILISNeutralLossModel , ProductModel< 2 > , MapAlignmentAlgorithmPoseClustering , SimpleExtender< PeakType, FeatureType > , MaxLikeliFitter1D , ReactionMonitoringTransition , DiaPrescore , DIAScoring , MRMTransitionGroupPicker , ItraqChannelExtractor , ItraqQuantifier , RTSimulation , IncludeExcludeTarget , PrecursorIonSelection , PeakPickerHiRes , PrecursorIonSelectionPreprocessing , MassDecompositionAlgorithm , SvmTheoreticalSpectrumGenerator , DefaultParamHandler , ElutionPeakDetection , ITRAQLabeler , IsotopeFitter1D , InterpolationModel , MassTraceDetection , FeatureFinderAlgorithmPicked< PeakType, FeatureType > , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container > , GaussModel , EGHTraceFitter< PeakType > , BaseModel< D > , RawMSSignalSimulation , MSSim , ExtendedIsotopeModel , IonizationSimulation , EGHFitter1D , LowessSmoothing , LinearResampler , SpectraMerger::SpectraDistance_ , MascotRemoteQuery , DetectabilitySimulation , EGHModel , BiGaussFitter1D , SILACLabeler , BiGaussModel , GaussFilter , EmgFitter1D , EmgModel , ExtendedIsotopeFitter1D , FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType > , GaussFitter1D , GaussTraceFitter< PeakType > , ICPLLabeler , LmaGaussModel , LmaIsotopeFitter1D , LmaIsotopeModel , ModelFitter< PeakType, FeatureType > , SavitzkyGolayFilter , OptimizePeakDeconvolution , NLargest
• updateMenu() : TOPPViewBase , TOPPASBase
• updateMinElement() : DistanceMatrix< Value >
• updateObjFunction_() : PSLPFormulation
• updatePercentageFactor_() : Spectrum1DCanvas
• updatePosition() : FuzzyStringComparator::InputLine
• updateProcessLog() : TOPPViewBase
• updateProjections() : Spectrum2DWidget , Spectrum2DCanvas
• updateRanges() : MSExperiment< PeakT, ChromatogramPeakT > , MSSpectrum< PeakT > , RangeManager< D > , MSExperiment< PeakT, ChromatogramPeakT > , ConsensusMap , FeatureMap< FeatureT > , MSChromatogram< PeakT >
• updateRanges_() : RangeManager< D >
• updateRecentMenu_() : TOPPViewBase
• updateRTConstraintsForSequentialILP() : PSLPFormulation
• updateScrollbars_() : Spectrum2DCanvas , Spectrum1DCanvas , SpectrumCanvas
• updateSmoothedMaxRT() : MassTrace
• updateSmoothedWeightedMeanRT() : MassTrace
• updateStepSizeConstraint() : PSLPFormulation
• updateTabBar() : TOPPViewBase , TOPPASBase
• updateToolBar() : TOPPViewBase , TOPPASBase
• updateTOPPOutputLog() : TOPPASBase
• updateTree_() : ProteinIdentificationVisualizer , PeptideIdentificationVisualizer
• updateUniqueIdToIndex() : UniqueIdIndexer< RandomAccessContainer >
• updateViewBar() : TOPPViewBase
• updateViewMode_() : TOPPViewOpenDialog
• updateVScrollbar() : SpectrumWidget , SpectrumCanvas
• updateWeightedMeanMZ() : MassTrace
• updateWeightedMeanRT() : MassTrace
• updateWeightedMZsd() : MassTrace
• updateWindowTitle() : INIFileEditorWindow
• upper_ : LinearRegression
• UPPER_BOUND_ONLY : LPWrapper
• UPSHIFT : PrecursorIonSelection
• uri : MzTabUnitIdMetaData , MzTabPeptideSectionRow
• URI : CV
• uri : MzTabSmallMoleculeSectionRow , MzTabProteinSectionRow
• url_ : ContactPerson , TOPPASResource , ContactPersonVisualizer
• use_coelution_score_ : MRMFeatureFinderScoring
• use_cuda_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
• use_elution_model_score_ : MRMFeatureFinderScoring
• use_gauss_ : MRMTransitionGroupPicker
• use_gpus_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
• use_IDs_ : StablePairFinder , QTClusterFinder , QTCluster
• use_intensity_score_ : MRMFeatureFinderScoring
• use_library_score_ : MRMFeatureFinderScoring
• use_log_model_ : EnzymaticDigestion
• use_nr_peaks_score_ : MRMFeatureFinderScoring
• use_precursor_data_ : PepXMLFile
• use_prefix_ : FuzzyStringComparator
• use_rt_score_ : MRMFeatureFinderScoring
• use_shape_score_ : MRMFeatureFinderScoring
• use_smoothed_intensities_ : FeatureFindingMetabo
• use_sn_score_ : MRMFeatureFinderScoring
• use_tags_ : SuffixArrayTrypticCompressed , SuffixArraySeqan
• use_tbb_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
• use_term_ : CVMappingTerm
• use_term_name_ : CVMappingTerm
• use_total_xic_score_ : MRMFeatureFinderScoring
• USED : FeatureFinderDefs
• user_params_ : MSQuantifications::AnalysisSummary
• user_specified_out_dir_ : TOPPASScene