- o -

• O18Labeler() : O18Labeler
• OfflinePrecursorIonSelection() : OfflinePrecursorIonSelection
• ok() : DBOpenDialog
• ok_() : ToolsDialog , TOPPASToolConfigDialog
• OMSSACSVFile() : OMSSACSVFile
• OMSSAXMLFile() : OMSSAXMLFile
• one_minus_sum_post() : PosteriorErrorProbabilityModel
• op_changed_() : DataFilterDialog
• open() : SuffixArray , SuffixArraySeqan , SuffixArrayTrypticCompressed , Bzip2Ifstream , GzipIfstream
• openAsNewWindow() : TOPPViewOpenDialog
• openContainingFolder() : TOPPASInputFileListVertex , TOPPASOutputFileListVertex , TOPPASToolVertex
• openDatabaseDialog() : TOPPViewBase
• openExampleDialog() : TOPPASBase , TOPPViewBase
• openFile() : INIFileEditorWindow
• openFileDialog() : IDEvaluationBase , TOPPASBase , TOPPViewBase
• openFilesInTOPPView() : TOPPASBase
• openglwidget() : Spectrum3DCanvas
• openInputFileStream_() : FuzzyStringComparator
• openInTOPPView() : TOPPASScene , TOPPASToolVertex
• OpenMSOSInfo() : OpenMSOSInfo
• OpenMSXMLFormatTarget() : OpenMSXMLFormatTarget
• openOnlinePipelineRepository() : TOPPASBase
• openPreferences() : SpectrumWidget
• openRecentFile() : TOPPViewBase
• openToppasFile() : TOPPASBase
• operator double() : DataValue , SparseVector< Value >::ValueProxy
• operator DoubleList() : DataValue
• operator float() : DataValue , SparseVector< Value >::ValueProxy
• operator int() : DataValue , SparseVector< Value >::ValueProxy
• operator IntList() : DataValue
• operator long double() : DataValue
• operator long int() : DataValue
• operator long long() : DataValue
• operator PointCoordinate() : HierarchicalClustering< PointRef >::BoundingBox
• operator short int() : DataValue
• operator std::string() : DataValue
• operator StringList() : DataValue
• operator unsigned int() : DataValue
• operator unsigned long int() : DataValue
• operator unsigned long long() : DataValue
• operator unsigned short int() : DataValue
• operator void *() : FuzzyStringComparator::InputLine
• operator!=() : AASequence , InstrumentSettings , IonDetector , Element , IonSource , MassAnalyzer , EmpiricalFormula , MetaInfo , MetaInfoInterface , EmpiricalFormula , MSQuantifications , PeptideEvidence , IsotopeDistribution , PeptideHit , PeptideIdentification , IMSElement , Precursor , Product , IMSIsotopeDistribution , ProteinHit , ProteinIdentification::SearchParameters , ModificationDefinition , ProteinIdentification , ScanWindow , ModificationDefinitionsSet , Software , SourceFile , Residue , SpectrumIdentification , SpectrumSettings , Residue , StopWatch , ModelDescription< D > , ResidueModification , PeakShape , FoundProteinFunctor , HashGrid< Cluster >::Iterator , HashGrid< Cluster >::ConstIterator , BinnedSpectrum , ChargePair , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , CVMappingRule , CVMappings , CVMappingTerm , CVReference , DIntervalBase< D > , DPosition< D, TCoordinateType > , Param::ParamIterator , SparseVector< Value >::ValueProxy , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , SparseVector< Value >::SparseVectorConstReverseIterator , IntensityIteratorWrapper< IteratorT > , DataFilters::DataFilter , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , BaseFeature , ChromatogramPeak , ConsensusMap , FeatureHandle , FeatureMap< FeatureT > , MSChromatogram< PeakT > , MSExperiment< PeakT, ChromatogramPeakT > , MSSpectrum< PeakT > , Peak1D , Peak2D , PeakIndex , RangeManager< D > , RichPeak1D , RichPeak2D , Histogram< ValueType, BinSizeType > , Acquisition , AcquisitionInfo , ChromatogramSettings , ReactionMonitoringTransition , ContactPerson , CVTerm::Unit , IncludeExcludeTarget , CVTerm , CVTermList , AASequence::ConstIterator , DataProcessing , DocumentIDTagger , AASequence::Iterator , ExperimentalSettings , Gradient , AASequence , HPLC , Identification , AASequence , IdentificationHit , Instrument
• operator()() : Peak2D::IntensityLess , Peak2D::RTLess , Peak2D::MZLess , Peak2D::PositionLess , HasMetaValue< MetaContainer > , InRTRange< SpectrumType > , InMSLevelRange< SpectrumType > , HasScanMode< SpectrumType > , IsEmptySpectrum< SpectrumType > , IsZoomSpectrum< SpectrumType > , HasActivationMethod< SpectrumType > , InPrecursorMZRange< SpectrumType > , HasPrecursorCharge< SpectrumType > , InMzRange< PeakType > , InIntensityRange< PeakType > , ROCCurve::simsortdec , PeptideHit::ScoreMore , PeptideHit::ScoreLess , ProteinHit::ScoreMore , ProteinHit::ScoreLess , IntensityLess< FeaFiModuleType > , IsotopeWaveletParallelFor< PeakType, FeatureType > , PeakWidthEstimator::Result , SimpleExtender< PeakType, FeatureType >::IndexWithPriority::PriorityLess , LCMS::OPERATOR_MZ , LCMS::OPERATOR_FeatureCompare , MS1FeatureMerger::OPERATOR_FEATURE_TR , PeakShape , PeakShape::PositionLess , FoundProteinFunctor , FeatureDistance , MapAlignmentAlgorithmSpectrumAlignment::Compare , ReactionMonitoringTransition::ProductMZLess , DiaPrescore , mySqrt , mean_and_stddev , InclusionExclusionList::WindowDistance_ , PrecursorIonSelection::TotalScoreMore , PrecursorIonSelection::SeqTotalScoreMore , PSLPFormulation::IndexLess , PSLPFormulation::ScanLess , PSLPFormulation::VariableIndexLess , IMSAlphabet::MassSortingCriteria_ , AverageLinkage , ClusterFunctor , CompleteLinkage , EuclideanSimilarity , SingleLinkage , BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSpectrumCompareFunctor , BinnedSumAgreeingIntensities , CompareFouriertransform , PeakAlignment , PeakSpectrumCompareFunctor , SpectraSTSimilarityScore , SpectrumAlignmentScore , SpectrumCheapDPCorr , SpectrumPrecursorComparator , SteinScottImproveScore , ZhangSimilarityScore , BinaryComposeFunctionAdapter< OP1, OP2, OP3 > , UnaryComposeFunctionAdapter< OP1, OP2 > , DistanceMatrix< Value > , Matrix< Value > , CmpMassTraceByMZ , CmpHypothesesByScore , SILACFiltering::SpectrumInterpolation , SpectraMerger::SpectraDistance_ , BaseFeature::QualityLess , ChromatogramPeak::IntensityLess , ChromatogramPeak::RTLess , ChromatogramPeak::PositionLess , PointerComparator< Cmp > , ReverseComparator< Cmp > , LexicographicComparator< Cmp1, Cmp2 > , PairComparatorFirstElement< PairType > , PairComparatorSecondElement< PairType > , PairComparatorFirstElementMore< PairType > , PairComparatorSecondElementMore< PairType > , PairMatcherFirstElement< PairType > , PairMatcherSecondElement< PairType > , EqualInTolerance< CompareType > , ConsensusFeature::SizeLess , ConsensusFeature::MapsLess , FeatureHandle::IndexLess , MSChromatogram< PeakT >::MZLess , MSSpectrum< PeakT >::RTLess , Peak1D::IntensityLess , Peak1D::MZLess , Peak1D::PositionLess
• operator*() : AASequence::ConstIterator , AASequence::Iterator , EdwardsLippertIterator , EmpiricalFormula , IsotopeDistribution , PepIterator , TrypticIterator , HashGrid< Cluster >::Iterator , HashGrid< Cluster >::ConstIterator , Adduct , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , Param::ParamIterator , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , SparseVector< Value >::SparseVectorConstReverseIterator , IntensityIteratorWrapper< IteratorT > , FastaIterator , FastaIteratorIntern , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , IntensityIterator< FeaFiModuleType > , MzIterator< FeaFiModuleType > , RtIterator< FeaFiModuleType >
• operator*=() : IsotopeDistribution , IMSIsotopeDistribution , DPosition< D, TCoordinateType >
• operator+() : TargetedExperiment , AASequence::ConstIterator , AASequence::Iterator , AASequence , EmpiricalFormula , IsotopeDistribution , MassDecomposition , Adduct , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , String , FeatureMap< FeatureT >
• operator++() : AASequence::ConstIterator , AASequence::Iterator , EdwardsLippertIterator , PepIterator , TrypticIterator , HashGrid< Cluster >::Iterator , HashGrid< Cluster >::ConstIterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , Param::ParamIterator , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , SparseVector< Value >::SparseVectorConstReverseIterator , IntensityIteratorWrapper< IteratorT > , FastaIterator , FastaIteratorIntern , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
• operator+=() : TargetedExperiment , AASequence , EmpiricalFormula , IsotopeDistribution , MassDecomposition , Adduct , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , String , ConsensusMap , FeatureMap< FeatureT >
• operator-() : AASequence::ConstIterator , AASequence::Iterator , EmpiricalFormula , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , IntensityIteratorWrapper< IteratorT >
• operator--() : AASequence::ConstIterator , AASequence::Iterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , SparseVector< Value >::SparseVectorConstReverseIterator
• operator-=() : EmpiricalFormula , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator
• operator->() : AASequence::ConstIterator , AASequence::Iterator , HashGrid< Cluster >::Iterator , HashGrid< Cluster >::ConstIterator , LogStream , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , Param::ParamIterator , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
• operator/=() : DPosition< D, TCoordinateType >
• operator<() : MS2Info , MSPeak , ProcessData , TOPPASToolVertex::IOInfo , PILISCrossValidation::Peptide , AASequence , EnzymaticDigestion::BindingSite , MassDecomposition , ModificationDefinition , SvmTheoreticalSpectrumGenerator::IonType , VersionInfo::VersionDetails , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , Matrix< Value > , QTCluster , SparseVector< Value > , SparseVector< Value >::ValueProxy , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , ToolDescriptionInternal , QcMLFile::QualityParameter , QcMLFile::Attachment , StopWatch , FeatureFinderAlgorithmPickedHelperStructs::Seed , BackgroundControl , CentroidPeak , ClusteredMS2ConsensusSpectrum , ConsensusIsotopePattern , FeatureLCProfile , FTPeakDetectController , LCElutionPeak , MS2ConsensusSpectrum , MS2Feature , MS2Fragment
• operator<<() : DoubleList , IntList , StringList , SVOutStream , DBoundingBox< D > , DistanceMatrix< Value > , Matrix< Value >
• operator<=() : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , SparseVector< Value >::ValueProxy , SparseVector< Value >::SparseVectorIterator , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstIterator , StopWatch , BackgroundControl , ClusteredMS2ConsensusSpectrum , ConsensusIsotopePattern , FeatureLCProfile , FTPeakDetectController , LCElutionPeak , MS2ConsensusSpectrum , MS2Feature , MS2Fragment , MS2Info , MSPeak , ProcessData
• operator=() : SpectraSTSimilarityScore , SpectrumAlignmentScore , PeakAlignment , CompareFouriertransform , StringList , FeatureFinderAlgorithm< PeakType, FeatureType > , BinnedSpectrum , ROCCurve , DataValue , SingleLinkage , EuclideanSimilarity , DataValue , CVMappings , ClusterAnalyzer , DataValue , TheoreticalSpectrumGenerator , DataValue , SvmTheoreticalSpectrumGeneratorSet , ConvexHull2D , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , SteinScottImproveScore , ZhangSimilarityScore , FeatureDeconvolution , CompNovoIdentification , CompNovoIdentificationBase , ModificationDefinition , MassDecompositionAlgorithm , CompNovoIdentificationBase::Permut , CompNovoIdentificationCID , IMSIsotopeDistribution , CompNovoIonScoring , IsotopeDistribution , CompNovoIonScoringBase::IonScore , EmpiricalFormula , ElementDB , CompNovoIonScoringBase , CompNovoIonScoringCID , AASequence , DeNovoAlgorithm , DeNovoIdentification , DeNovoIonScoring::IonScore , TraMLProduct , Prediction , DeNovoIonScoring , DeNovoPostScoring , Contact , ConsensusID , Compound , FalseDiscoveryRate , Protein , HMMState , HiddenMarkovModel , IDDecoyProbability , IDDecoyProbability::Transformation_ , IDMapper , IDRipper , PILISCrossValidation::Peptide , ItraqQuantifier , PILISCrossValidation::Option , PILISCrossValidation , PILISIdentification , MRMTransitionGroupPicker , PILISModel , PILISModelGenerator , PILISNeutralLossModel , MRMFragmentSelection , PILISScoring , ProtonDistributionModel , BaseGroupFinder , MapAlignmentEvaluationAlgorithm , BaseSuperimposer , ConsensusMapNormalizerAlgorithmMedian , ConsensusMapNormalizerAlgorithmQuantile , MapAlignmentAlgorithm , ConsensusMapNormalizerAlgorithmThreshold , FeatureDistance , FeatureGroupingAlgorithm , FeatureGroupingAlgorithmIdentification , FeatureGroupingAlgorithmLabeled , FeatureGroupingAlgorithmQT , FeatureGroupingAlgorithmUnlabeled , LabeledPairFinder , ProductModel< 2 > , MapAlignmentAlgorithmIdentification , MapAlignmentAlgorithmPoseClustering , MapAlignmentAlgorithmSpectrumAlignment , MapAlignmentEvaluationAlgorithmPrecision , MapAlignmentEvaluationAlgorithmRecall , TransformationDescription , SimpleExtender< PeakType, FeatureType > , ReactionMonitoringTransition , CachedmzML , DIAScoring , LocalLinearMap , PeakIntensityPredictor , ItraqChannelExtractor , MaxLikeliFitter1D , ProteinInference , ProteinResolver , QuantitativeExperimentalDesign , IncludeExcludeTarget , PrecursorIonSelectionPreprocessing , TargetedExperiment , Configuration , LmaGaussFitter1D , LmaIsotopeModel , RetentionTime , Peptide , Publication , Instrument , LmaIsotopeFitter1D , InterpolationModel , ParameterInformation , AASequence::ConstIterator , AASequence::Iterator , EdwardsLippertIteratorTryptic , Element , IsotopeModel , Fitter1D , GaussTraceFitter< PeakType > , EmpiricalFormula , IMSElement , Weights , MassDecomposition , GaussModel , Acquisition , ModificationDefinitionsSet , ModificationsDB , Residue , ResidueDB , ResidueModification , SvmTheoreticalSpectrumGenerator::IonType , SvmTheoreticalSpectrumGenerator , EmgModel , FeaFiModule< PeakType, FeatureType > , SvmTheoreticalSpectrumGeneratorTrainer , AverageLinkage , ClusterFunctor , CompleteLinkage , ExtendedIsotopeModel , BiGaussFitter1D , BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSpectrum , BinnedSpectrumCompareFunctor , BinnedSumAgreeingIntensities , EGHTraceFitter< PeakType > , RTSimulation , BaseModel< D > , PeakSpectrumCompareFunctor , SpectrumAlignment , SpectrumCheapDPCorr , SpectrumPrecursorComparator , StopWatch , EGHModel , FuzzyStringComparator , LogConfigHandler , StreamHandler , UniqueIdInterface , BinaryTreeNode , ChargePair , DoubleList , Compomer , Tagging , EGHFitter1D , ConstRefVector< ContainerT > , CVMappingRule , CVMappingTerm , CVReference , DigestSimulation , Software , DataValue , SpectrumIdentification , ProteinIdentification , DataValue , TraceFitter< PeakType > , DataValue , SampleTreatment , Precursor , DataValue , Date , DateTime , FilterFunctor , DBoundingBox< D > , DefaultParamHandler , DIntervalBase< D > , MSQuantifications , TOPPASEdge , PenaltyFactors , OptimizePeakDeconvolution , PeptideIdentification , DoubleList , DRange< D > , TOPPASResource , ConsensusIsotopePattern , PeptideHit , MetaInfoRegistry , TOPPASToolVertex::IOInfo , IntList , MassExplainer , Matrix< Value > , LevMarqFitter1D , SparseVector< Value > , TOPPASMergerVertex , GaussFitter1D , SparseVector< Value >::ValueProxy , MSQuantifications::AnalysisSummary , MassAnalyzer , MetaInfoInterface , SparseVector< Value >::SparseVectorReverseIterator , SparseVector< Value >::SparseVectorConstReverseIterator , StringList , RawTandemMSSignalSimulation , MetaInfoDescription , Instrument , ToolDescriptionInternal , SpectrumSettings , SourceFile , ScanWindow , ToolDescription , FeatureHypothesis , SignalToNoiseEstimator< Container > , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container > , MSQuantifications::Assay , Modification , SemanticValidator , BernNorm , IonSource , Gradient , IdentificationHit , ComplementMarker , ExperimentalSettings , DocumentIdentifier , DataProcessing , CVTermList , GoodDiffFilter , IsotopeDiffFilter , IsotopeMarker , Identification , GumbelDistributionFitter , Digestion , MSChromatogram< PeakT > , NeutralLossMarker , RichPeak2D , NLargest , Peak1D , Normalizer , MSExperiment< PeakT, ChromatogramPeakT > , MRMTransitionGroup< SpectrumType, TransitionType > , MassTrace , FeatureMap< FeatureT > , PeakMarker , Scaler , BasicStatistics< RealT > , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , TraMLValidator , MzQuantMLValidator , GumbelDistributionFitter::GumbelDistributionFitResult , MzDataValidator , SequestInfile , DocumentIDTagger , PosteriorErrorProbabilityModel , PepNovoInfile , MascotRemoteQuery , InspectOutfile , ToolDescriptionHandler , MzQuantMLHandler , CVTerm::Unit , ThresholdMower , TICFilter , WindowMower , Bzip2InputStream , CompressedInputSource , ControlledVocabulary::CVTerm , CVMappingFile , TOPPASVertex , PersistentObject , FastaIterator , GzipIfstream , GzipInputStream , MzIdentMLHandler , Histogram< ValueType, BinSizeType > , InspectInfile , OMSSAXMLFile , GammaDistributionFitter , QcMLFile::QualityParameter , QcMLFile::Attachment , UnimodXMLFile , BilinearInterpolation< Key, Value > , GammaDistributionFitter::GammaDistributionFitResult , XTandemXMLFile , RangeManager< D > , ConsensusFeature::Ratio , ConsensusFeature , ConsensusMap , FeatureHandle , MSExperiment< PeakT, ChromatogramPeakT > , Peak2D , MSSpectrum< PeakT > , MRMFeature , RichPeak1D , RichPeak2D , LinearInterpolation< Key, Value > , Feature , GaussFitter , LinearRegression , ChromatogramPeak , AcquisitionInfo , ChromatogramSettings , ContactPerson , CVTerm , XTandemInfile , BaseFeature , HPLC , MzMLValidator , InstrumentSettings , IonDetector , MetaInfo , SequestOutfile , MzIdentMLValidator , PeptideEvidence , PepXMLFile::AminoAcidModification , Product , ProteinHit , Sample , MSPFile , PepNovoOutfile , DetectabilitySimulation , TraMLHandler , IonizationSimulation , RawMSSignalSimulation , SimRandomNumberGenerator , BiGaussModel , EmgFitter1D , ExtendedIsotopeFitter1D , DataValue , BackgroundIntensityBin , FeatureFinderAlgorithmPicked< PeakType, FeatureType > , FeatureFinderAlgorithmSimple< PeakType, FeatureType > , FeatureFinderAlgorithmSimplest< PeakType, FeatureType > , PenaltyFactorsIntensity , Bzip2Ifstream , IsotopeFitter1D , LmaGaussModel , SqrtMower , ModelDescription< D > , ModelFitter< PeakType, FeatureType > , SimpleSeeder< PeakType, FeatureType > , ParentPeakMower , SpectraMerger , TOPPASResources , NeutralLossDiffFilter , MultiGradient , MS2Info , ProcessData , SuperHirnParameters , IntensityBalanceFilter , MarkerMower , TOPPASInputFileListVertex , ComplementFilter , TOPPASOutputFileListVertex , Annotations1DContainer , TOPPASToolVertex , PeakShape , TwoDOptimization , SparseVector< Value >::ValueProxy , MappingParam , CentroidPeak , MS2Fragment , SparseVector< Value >::SparseVectorIterator , FileMapping , SparseVector< Value >::SparseVectorConstIterator , IntList , Param , SHFeature , IntList , MSPeak , DPosition< D, TCoordinateType > , LCMS , DeconvPeak , DistanceMatrix< Value > , LCMSCData , MS2ConsensusSpectrum , DataValue , LCElutionPeak , DataValue , FeatureLCProfile , FTPeakDetectController
• operator==() : Param , CVTermList , SVMData , RangeManager< D > , DRange< D > , CVMappings , ConsensusMap , PeakShape , Digestion , DocumentIdentifier , MetaInfoDescription , SparseVector< Value > , Param::ParamNode , QcMLFile::Attachment , MSQuantifications , ConstRefVector< ContainerT > , ProteinIdentification::SearchParameters , SequestInfile , Residue , RichPeak1D , SequestOutfile , Peak1D , CVTerm , BaseFeature , DRange< D > , BackgroundControl , IdentificationHit , CVTerm::Unit , Param::ParamIterator , ExperimentalSettings , Gradient , SparseVector< Value >::ValueProxy , CV , RetentionTime , SampleTreatment , ContactPerson , ModelDescription< D > , ClusteredMS2ConsensusSpectrum , FeatureMap< FeatureT > , DBoundingBox< D > , Histogram< ValueType, BinSizeType > , ChromatogramSettings , DataFilters::DataFilter , SparseVector< Value >::SparseVectorReverseIterator , PepNovoInfile , InspectInfile , PepNovoOutfile , MSExperiment< PeakT, ChromatogramPeakT > , Peak2D , InspectOutfile , Feature , SparseVector< Value >::SparseVectorConstIterator , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , ChromatogramPeak , QcMLFile::QualityParameter , ProteinIdentification , DefaultParamHandler , AcquisitionInfo , IonSource , SourceFile , ProteinHit , DocumentIDTagger , Residue , SparseVector< Value >::SparseVectorIterator , IncludeExcludeTarget , Matrix< Value > , Instrument , PeptideIdentification , MassAnalyzer , CVMappingRule , Protein , InstrumentSettings , FoundProteinFunctor , MS2Fragment , AASequence , IMSIsotopeDistribution , ModificationDefinitionsSet , IonDetector , MS2Feature , SpectrumIdentification , AASequence , BinnedSpectrum , Contact , ChargePair , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , FeatureHandle , Publication , PeptideHit , Product , Precursor , ConvexHull2D , MetaInfo , DBoundingBox< D > , ResidueModification , Acquisition , MSChromatogram< PeakT > , Prediction , MetaInfoInterface , Compound , CVReference , PeptideEvidence , AASequence , CVMappingTerm , EnzymaticDigestion::BindingSite , IMSElement , IMSIsotopeDistribution::Peak , VersionInfo::VersionDetails , HashGrid< Cluster >::Iterator , Sample , UniqueIdInterface , TraMLProduct , ReactionMonitoringTransition , IsotopeDistribution , ModificationDefinition , AASequence::Iterator , SHFeature , EmpiricalFormula , ConsensusIsotopePattern , Element , Identification , MS2ConsensusSpectrum , SpectrumSettings , DistanceMatrix< Value > , HashGrid< Cluster >::ConstIterator , EmpiricalFormula , Software , Tagging , Instrument , MSSpectrum< PeakT > , MassDecomposition , StopWatch , RichPeak2D , Peptide , DIntervalBase< D > , BinnedSpectrum , AASequence::ConstIterator , ProteinIdentification::ProteinGroup , Modification , MS2Info , TargetedExperiment , PeakIndex , IntensityIteratorWrapper< IteratorT > , Param::ParamEntry , ScanWindow , DPosition< D, TCoordinateType > , ToolDescriptionInternal , FASTAFile::FASTAEntry , HPLC , FeatureLCProfile , DataProcessing
• operator>() : MS2Info , VersionInfo::VersionDetails , StopWatch , SparseVector< Value >::SparseVectorIterator , MS2ConsensusSpectrum , ProcessData , MS2Feature , SparseVector< Value >::SparseVectorReverseIterator , MS2Fragment , MSPeak , DPosition< D, TCoordinateType > , FeatureLCProfile , HierarchicalClustering< PointRef >::TreeDistance , QcMLFile::Attachment , ConstRefVector< ContainerT > , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , SparseVector< Value >::ValueProxy , QcMLFile::QualityParameter , LCElutionPeak , FTPeakDetectController , ClusteredMS2ConsensusSpectrum , ConsensusIsotopePattern , SparseVector< Value >::SparseVectorConstIterator , BackgroundControl
• operator>=() : MS2Feature , MS2Fragment , FTPeakDetectController , SparseVector< Value >::SparseVectorIterator , ClusteredMS2ConsensusSpectrum , DPosition< D, TCoordinateType > , SparseVector< Value >::SparseVectorConstIterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , LCElutionPeak , MSPeak , BackgroundControl , FeatureLCProfile , StopWatch , ConsensusIsotopePattern , SparseVector< Value >::ValueProxy , ProcessData , MS2Info , SparseVector< Value >::SparseVectorReverseIterator , MS2ConsensusSpectrum
• operator[]() : SparseVector< Value > , DPosition< D, TCoordinateType > , SparseVector< Value >::SparseVectorConstIterator , AASequence , Histogram< ValueType, BinSizeType > , ContinuousWaveletTransform , SparseVector< Value >::SparseVectorReverseIterator , DataFilters , MassTrace , Map< Key, T > , ContinuousWaveletTransform , IntensityIteratorWrapper< IteratorT > , SparseVector< Value > , Map< Key, T > , DPosition< D, TCoordinateType > , Weights , ConstRefVector< ContainerT > , SparseVector< Value >::SparseVectorIterator , MassTrace
• operator|() : HierarchicalClustering< PointRef >::BoundingBox
• operator|=() : HierarchicalClustering< PointRef >::BoundingBox
• optimize() : OptimizePick , OptimizePeakDeconvolution , TwoDOptimization
• optimize_() : TraceFitter< PeakType > , LevMarqFitter1D
• optimizeAnnotations_() : QTCluster
• OptimizePeakDeconvolution() : OptimizePeakDeconvolution
• OptimizePick() : OptimizePick
• optimizeRegions_() : TwoDOptimization
• optimizeRegionsScanwise_() : TwoDOptimization
• Option() : PILISCrossValidation::Option
• optionalAttributeAsDouble_() : XMLHandler
• optionalAttributeAsDoubleList_() : XMLHandler
• optionalAttributeAsInt_() : XMLHandler
• optionalAttributeAsIntList_() : XMLHandler
• optionalAttributeAsString_() : XMLHandler
• optionalAttributeAsStringList_() : XMLHandler
• optionalAttributeAsUInt_() : XMLHandler
• order_by_mass() : LCMS
• orderBest_() : PeptideAndProteinQuant
• outEdgeHasChanged() : TOPPASInputFileListVertex , TOPPASVertex , TOPPASToolVertex
• outEdgesBegin() : TOPPASVertex
• outEdgesEnd() : TOPPASVertex
• outgoingEdgesCount() : TOPPASVertex
• outlier_candidate() : MRMRTNormalizer
• OutOfGrid() : OutOfGrid
• OutOfMemory() : OutOfMemory
• OutOfRange() : OutOfRange
• outputFileWritable_() : TOPPBase
• outputFileWritten() : TOPPASOutputFileListVertex
• outputVertexFinished() : TOPPASBase
• outsideExtractionWindow_() : ChromatogramExtractor
• overflow() : LogStreamBuf