- m -

• m_ : mean_and_stddev , EdwardsLippertIterator
• m_2H : RNPxlReportRow
• m_3H : RNPxlReportRow
• m_4H : RNPxlReportRow
• m_features : MockMRMFeature
• m_H : RNPxlReportRow
• m_intensity : MockFeature , MockMRMFeature
• m_intensity_vec : MockFeature
• m_library_intensities : MockTransitionGroup
• m_native_ids : MockTransitionGroup
• m_rt : MockFeature , MockMRMFeature
• m_rt_vec : MockFeature
• m_size : MockTransitionGroup
• m_sn_value : MockSignalToNoise
• magnetic_field_strength_ : MassAnalyzer
• magnetic_fs_ : MassAnalyzerVisualizer
• mainlayout_ : BaseVisualizerGUI
• major_version_ : MascotXMLHandler
• maldi_probabilities_ : IonizationSimulation
• map_ : INIUpdater , FeatureXMLFile , FeaFiModule< PeakType, FeatureType > , FeatureFinderAlgorithm< PeakType, FeatureType > , FeatureFinderAlgorithmPicked< PeakType, FeatureType > , FeatureFinderAlgorithmSH< PeakType, FeatureType > , TOPPASResources
• map_as_2d_disabled_ : TOPPViewOpenDialog
• map_index_ : FeatureHandle , GridFeature
• map_label_ : FeatureDeconvolution
• map_label_inverse_ : FeatureDeconvolution
• map_points_ : ConvexHull2D
• map_precursor_to_chrom_idx_cache : SpectraViewWidget
• map_unitid_to_meta_data_ : MzTab
• map_unitid_to_peptide_data_ : MzTab
• map_unitid_to_protein_data_ : MzTab
• map_unitid_to_small_molecule_data_ : MzTab
• mapping : MappingParam
• mapping_ : MzMLHandler< MapType > , SemanticValidator
• mapping_rules_ : CVMappings
• margin_ : AxisWidget , HistogramWidget , MultiGradientSelector
• marker_ions : RNPxlReportRow
• markers_ : MarkerMower
• mascot_xml_ : MascotRemoteQuery
• mass : IMSIsotopeDistribution::Peak , PepXMLFile::AminoAcidModification , MS1Signal
• mass_ : Compomer , Modification , Sample , CentroidPeak
• mass_analyzers_ : Instrument
• mass_decomp_algorithm_ : CompNovoIdentificationBase
• mass_diff_ : ChargePair
• mass_error_ppm_ : MassTraceDetection
• mass_in_lcms_ : IntegerMassDecomposer< ValueType, DecompositionValueType >
• mass_mapping_ : ModifierRep
• mass_separations : SILACFiltering::BlacklistEntry
• mass_separations_ : SILACFilter
• mass_shift_ : Tagging
• mass_shifts : SILACPoint
• mass_to_charge : MzTabPeptideSectionRow , MzTabSmallMoleculeSectionRow
• mass_type : ProteinIdentification::SearchParameters
• mass_type_ : MascotInfile , ProteinIdentificationVisualizer
• mass_type_fragment_ : SequestInfile
• mass_type_parent_ : SequestInfile
• mass_window_width_ : IsotopeDistributionCache , FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• massdev_score : OpenSwath_Scores
• massdiff : PepXMLFile::AminoAcidModification
• masse_ : EdwardsLippertIterator , SuffixArraySeqan , SuffixArrayTrypticCompressed
• masses_ : PrecursorIonSelectionPreprocessing
• massMax_ : EdwardsLippertIterator
• massTolDa_ : SuperHirnParameters
• massTolPpm_ : SuperHirnParameters
• MASTER_ID : LCMS , SHFeature
• match_peak_allowed_error_ : SequestInfile
• match_peak_count_ : SequestInfile
• match_peak_tolerance_ : SequestInfile
• matched_feature_list : SHFeature
• matching_peaks : TwoDOptimization::Data
• matching_peaks_ : TwoDOptimization
• matrix_ : DistanceMatrix< Value >
• max : FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern , PeakPickerCWT::PeakArea_ , LayerStatisticsDialog::MetaStatsValue_
• max_ : DIntervalBase< D > , InRTRange< SpectrumType > , InMzRange< PeakType > , InIntensityRange< PeakType > , Histogram< ValueType, BinSizeType > , EGHModel , BiGaussModel , EmgModel , Fitter1D , GaussModel , LmaGaussModel , LmaIsotopeModel , AxisWidget
• max_AA_per_mod_per_peptide_ : SequestInfile
• max_adduct_charge_ : IonizationSimulation
• max_charge_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType > , IsotopeWavelet , IsotopeWaveletTransform< PeakType > , LayerStatisticsDialog
• max_correctly_ : PosteriorErrorProbabilityModel
• max_decomp_weight_ : CompNovoIdentificationBase
• max_diff_mz_ : QTClusterFinder
• max_diff_ppm : FeatureDistance::DistanceParams_
• max_diff_rt_ : QTClusterFinder
• max_difference : FeatureDistance::DistanceParams_
• max_distance_ : QTCluster
• max_elements_ : LayerStatisticsDialog
• max_feature_intersection_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• max_float : ParameterInformation , Param::ParamEntry
• max_fwhm_ : ElutionPeakDetection
• max_incorrectly_ : PosteriorErrorProbabilityModel
• max_int : ParameterInformation , Param::ParamEntry
• max_intensity : IDDecoyProbability::Transformation_
• max_intensity_ : FeatureDistance , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container > , LayerStatisticsDialog
• max_intensity_bin : IDDecoyProbability::Transformation_
• max_inter_scan_distance : ProcessData
• max_internal_cleavage_sites_ : SequestInfile
• max_isotope_ : CompNovoIdentificationBase , IsotopeDistribution , ExtendedIsotopeFitter1D , ExtendedIsotopeModel , IsotopeFitter1D , IsotopeModel , LmaIsotopeFitter1D , LmaIsotopeModel , ModelFitter< PeakType, FeatureType >
• max_iteration_ : PrecursorIonSelection , LevMarqFitter1D , ModelFitter< PeakType, FeatureType > , OptimizePick , TwoDOptimization
• max_iterations_ : TraceFitter< PeakType >
• max_missing_trace_peaks_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• max_mods_per_peptide_ : ModificationDefinitionsSet , SequestInfile
• max_mz_ : CompNovoIdentificationBase
• max_mz_cutoff_ : IsotopeWaveletTransform< PeakType >
• max_neutrals_ : MassExplainer
• max_num_peaks_considered_ : MapAlignmentAlgorithmPoseClustering
• max_num_peaks_per_pattern_ : IsotopeWaveletTransform< PeakType >
• max_number_aa_per_decomp_ : CompNovoIdentificationBase
• max_number_pivot_ : CompNovoIdentificationBase
• max_occurences_ : ModificationDefinition
• max_peak : FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
• max_peak_distance_ : TwoDOptimization
• max_pep_lens_ : SequestOutfile
• max_precursor_charge_ : XTandemInfile
• max_quality_ : LayerStatisticsDialog
• max_rt : FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
• max_rt_span_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• max_scan_size_ : IsotopeWaveletTransform< PeakType >
• max_score : IDDecoyProbability::Transformation_
• max_score_ : PrecursorIonSelection
• max_span_ : MassExplainer
• max_subscore_number_ : CompNovoIdentificationBase
• MAX_TIME : LogStreamBuf
• max_trace : FeatureFinderAlgorithmPickedHelperStructs::MassTraces< PeakType >
• max_trace_length_ : ElutionPeakDetection
• max_valid_evalue_ : XTandemInfile
• maxFeatureChrg_ : SuperHirnParameters
• maxFeatureMZ_ : SuperHirnParameters
• maximal_mz_measurement_limit_ : IonizationSimulation
• maxInterScanRetentionTimeDistance_ : SuperHirnParameters
• maxptmsize_ : InspectInfile
• maxTR_ : SuperHirnParameters
• me_ : IsotopeWavelet
• mean : SignalToNoiseEstimator< Container >::GaussianEstimate
• mean_ : BasicStatistics< RealT > , IsotopeModel , LmaIsotopeFitter1D , LmaIsotopeModel , BackgroundIntensityBin
• mean_residuals_ : LinearRegression
• measure_ : IDMapper
• measurement_start_ : Spectrum2DCanvas , SpectrumCanvas
• measurement_start_point_ : Spectrum1DCanvas
• medium_channel_arginine_label_ : SILACLabeler
• MEDIUM_CHANNEL_ID_ : O18Labeler
• medium_channel_label_ : ICPLLabeler
• medium_channel_lysine_label_ : SILACLabeler
• MEDIUM_FEATURE_MAPID_ : ICPLLabeler , SILACLabeler
• message_label_ : IDEvaluationBase , TOPPASBase , TOPPViewBase
• message_level : LPWrapper::SolverParam
• meta : MzMLHandler< MapType >::BinaryData
• meta_ : MetaInfoInterface
• meta_array_stats_ : LayerStatisticsDialog
• meta_id_descs_ : MzDataHandler< MapType >
• meta_indices_ : DataFilters
• meta_ms_experiment_ : SpectrumAccessOpenMSCached
• meta_name : DataFilters::DataFilter
• meta_stats_ : LayerStatisticsDialog
• metabuttons_ : MetaInfoVisualizer
• metadata_only_ : FeatureFileOptions , PeakFileOptions
• metainfodescription_name_ : MetaInfoDescriptionVisualizer
• metainfoptr_ : MetaInfoVisualizer
• metalabels_ : MetaInfoVisualizer
• metavalue_key_ : HasMetaValue< MetaContainer >
• method_ : Normalizer
• method_of_combination_ : AcquisitionInfo
• methods_ : HasActivationMethod< SpectrumType >
• min : LayerStatisticsDialog::MetaStatsValue_
• min_ : LmaGaussModel , BiGaussModel , InMzRange< PeakType > , DIntervalBase< D > , InRTRange< SpectrumType > , InIntensityRange< PeakType > , Histogram< ValueType, BinSizeType > , EGHModel , EmgModel , Fitter1D , GaussModel , LmaIsotopeModel , AxisWidget
• min_aa_weight_ : CompNovoIdentificationBase
• min_charge_ : LayerStatisticsDialog
• min_detect_ : DetectabilitySimulation
• min_element_ : DistanceMatrix< Value >
• min_elements_ : LayerStatisticsDialog
• min_float : ParameterInformation , Param::ParamEntry
• min_fwhm_ : ElutionPeakDetection
• min_int : Param::ParamEntry , ParameterInformation
• min_intensity_ : LayerStatisticsDialog
• min_isotope_fit_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• min_mz_ : CompNovoIdentificationBase
• min_pep_ids_ : PrecursorIonSelection
• min_quality_ : LayerStatisticsDialog
• min_required_elements_ : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
• min_rt_span_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• min_run_occur_ : MapAlignmentAlgorithmIdentification
• min_sample_rate_ : MassTraceDetection
• min_score : IDDecoyProbability::Transformation_
• min_spacing_ : IsotopeWaveletTransform< PeakType >
• min_spectra_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• min_trace_length_ : ElutionPeakDetection , MassTraceDetection
• min_trace_score_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• minFeatureChrg_ : SuperHirnParameters
• minFeatureMZ_ : SuperHirnParameters
• minimal_mz_measurement_limit_ : IonizationSimulation
• MINIMAL_PEP_PROPHET_THERSHOLD : LCMS
• minimal_protein_list_accessions_ : PSProteinInference
• minIntensity_ : SuperHirnParameters
• minNbClusterMembers_ : SuperHirnParameters
• minor_version_ : MascotXMLHandler
• minTR_ : SuperHirnParameters
• mip_gap : LPWrapper::SolverParam
• mirror_mode_ : Spectrum1DCanvas
• mismatchscore_ : MapAlignmentAlgorithmSpectrumAlignment
• missed_cleavages : ProteinIdentification::SearchParameters
• missed_cleavages_ : EnzymaticDigestion , MascotInfile , ProteinIdentificationVisualizer , PeptideEvidence
• ml1_ : AcqusHandler
• ml1s_ : TOFCalibration
• ml2_ : AcqusHandler
• ml2s_ : TOFCalibration
• ml3_ : AcqusHandler
• ml3s_ : TOFCalibration
• mod : MzTabUnitIdMetaData
• mod_ : ModificationDefinition
• mod_combinations : ModificationMassesResult
• mod_def_set_ : OMSSAXMLFile , XTandemXMLFile
• mod_formula_idx : ModificationMassesResult
• mod_identifier_ : MzTabModification
• MOD_LIST : MS2Info
• mod_masses : ModificationMassesResult
• mod_probability_method : MzTabUnitIdMetaData
• mode_ : HasScanMode< SpectrumType >
• model2D_ : ModelFitter< PeakType, FeatureType >
• model_ : TransformationDescription , Instrument , SVMWrapper , PSLPFormulation , InstrumentVisualizer
• model_data_ : EnzymaticDigestion
• model_desc_ : Feature , FeatureXMLFile
• model_deviation_ : SILACFilter
• model_type_ : TransformationDescription , TransformationXMLFile
• modifiable : LayerData
• modification_ : UnimodXMLHandler , Residue
• modification_names_ : ModificationsDB
• modification_output_method_ : SuffixArrayPeptideFinder
• modification_table_ : ModifierRep
• modificationAA_ : ModificationVisualizer , TaggingVisualizer
• modificationmass_ : ModificationVisualizer , TaggingVisualizer
• modificationname_ : TaggingVisualizer , ModificationVisualizer
• modifications : MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow , LightPeptide , Peptide , MzTabPeptideSectionRow
• modifications_ : OMSSAXMLFile , UnimodXMLHandler , XTandemInfile
• modifications_per_peptide_ : InspectInfile
• modificationspecificity_ : TaggingVisualizer , ModificationVisualizer
• modified : LayerData
• modified_ : ParamEditor
• modified_peptides_ : MascotXMLHandler
• modified_residues_ : ResidueDB
• modify_strings_ : SVOutStream
• mods : Peptide
• mods_ : MSQuantifications::Assay , MascotInfile , PepNovoInfile , ModificationsDB
• mods_and_keys_ : PepNovoInfile
• mods_map_ : OMSSAXMLFile
• mods_to_num_ : OMSSAXMLFile
• module_ : MzIterator< FeaFiModuleType > , RtIterator< FeaFiModuleType > , IntensityLess< FeaFiModuleType > , IntensityIterator< FeaFiModuleType >
• mono_mass : MS2Info
• mono_mass_ : UnimodXMLHandler , ResidueModification
• mono_mass_delta : Peptide::Modification
• MONO_MZ : MS2Info , SHFeature
• MONO_MZ_END : SHFeature
• MONO_MZ_ORIGINAL : SHFeature
• MONO_MZ_START : SHFeature
• mono_weight_ : Element , Residue
• monoisotopic_mass_known_ : LmaIsotopeFitter1D
• monoisotopic_mz_ : LmaIsotopeFitter1D , IsotopeModel , ModelFitter< PeakType, FeatureType > , ExtendedIsotopeModel , ExtendedIsotopeFitter1D , LmaIsotopeModel
• mouse_move_begin_ : Spectrum3DOpenGLCanvas
• mouse_move_end_ : Spectrum3DOpenGLCanvas
• moving_annotations_ : Spectrum1DCanvas
• moving_splitter_ : HistogramWidget
• mp_ : SvmTheoreticalSpectrumGenerator
• mrmfeature_ : MRMFeatureOpenMS
• mrmscore_ : MRMFeatureFinderScoring
• ms1FeatureClustering_ : SuperHirnParameters
• ms1FeatureMergingTrTolerance_ : SuperHirnParameters
• ms1PeakAreaTrResolution_ : SuperHirnParameters
• ms1TRResolution_ : SuperHirnParameters
• MS2_MZ_TOLERANCE : MS2ConsensusSpectrum
• MS2_SCANS : SHFeature
• MS2_TYPE_TAG : MS2Info
• MS2FragmentPeaks : MS2ConsensusSpectrum
• MS2Scans : ClusteredMS2ConsensusSpectrum
• MS2TraceFeature : SHFeature
• ms_experiment_ : SpectrumAccessOpenMS
• ms_file_ : MzTabSpectraRef
• ms_file_format : MzTabUnitIdMetaData
• ms_file_id_format : MzTabUnitIdMetaData
• ms_file_location : MzTabUnitIdMetaData
• ms_level : SpectrumMeta
• ms_level_ : MSSpectrum< PeakT >
• ms_levels_ : MSExperiment< PeakT, ChromatogramPeakT > , PeakFileOptions
• msd_group : ProteinResolver::PeptideEntry , ProteinResolver::ProteinEntry
• msd_groups : ProteinResolver::ISDGroup
• msds : ProteinResolver::ResolverResult
• msq_ : MzQuantMLHandler
• mt_snr_filtering_ : ElutionPeakDetection
• mu_ : PrecursorIonSelectionPreprocessing
• multicharge_ : InspectInfile
• mw_ : HistogramDialog
• mz : IsotopeWaveletTransform< PeakType >::BoxElement
• MZ : MSPeak
• mz : SILACPoint , cudaHelp , FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >::BoxElement
• mz_ : Product , PepXMLFile
• MZ_ : InclusionExclusionList::IEWindow
• mz_ : PrecursorVisualizer , MascotInfile
• mz_32_bit_ : PeakFileOptions
• mz_as_ppm_ : InclusionExclusionList::WindowDistance_
• MZ_begin : IsotopeWaveletTransform< PeakType >::BoxElement
• MZ_CLUSTER : ProcessData
• MZ_end : IsotopeWaveletTransform< PeakType >::BoxElement
• mz_error_mean_ : RawMSSignalSimulation
• mz_error_stddev_ : RawMSSignalSimulation
• mz_input_data_ : ModelFitter< PeakType, FeatureType >
• mz_label_ : TOPPViewBase
• mz_left_ : InPrecursorMZRange< SpectrumType >
• mz_max_ : SpectraMerger::SpectraDistance_ , InclusionExclusionList::WindowDistance_
• mz_model : Summary
• mz_peptide_separations_ : SILACFilter
• mz_position : PeakShape
• mz_positions : SILACPoint
• mz_range_ : FeatureFileOptions , PeakFileOptions
• mz_right_ : InPrecursorMZRange< SpectrumType >
• mz_score : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
• mz_stat_ : ModelFitter< PeakType, FeatureType >
• mz_stdev : Summary
• mz_to_x_axis_ : SpectrumCanvas
• mz_tol_ : PepXMLFile
• mz_tolerance_ : IDMapper , PrecursorIonSelection
• mz_tolerance_unit_ : PrecursorIonSelection
• mzClusters : MS1FeatureMerger
• mzCoord_ : BackgroundIntensityBin
• mzIsotopesStDev_ : ConsensusIsotopePattern
• mzTolPpm_ : SuperHirnParameters