- r -

• r_r_obj_ : MzQuantMLHandler
• r_rtemp_ : MzQuantMLHandler
• r_squared_ : LinearRegression
• r_value : PeakShape
• radius : LocalLinearMap::LLMParam
• radius_ : PeakPickerCWT
• range : SILACFiltering::BlacklistEntry
• rank_ : IdentificationHit , PeptideHit , ProteinHit
• rank_sp_weights_ : SequestOutfile
• ratio_max_ : FuzzyStringComparator
• ratio_max_allowed_ : FuzzyStringComparator
• ratio_value_ : ConsensusFeature::Ratio
• ratios_ : ConsensusFeature
• raw_data_first : TwoDOptimization::Data
• raw_files_ : MSQuantifications::Assay
• raw_spec_names : LCMS
• rawIsotopes_ : ConsensusIsotopePattern
• reachable_ : TOPPASVertex
• reagent_name_ : Modification
• real_2D_ : TwoDOptimization
• real_RT_votes_cutoff_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
• recent_actions_ : TOPPViewBase
• recent_files_ : TOPPViewBase
• record_length_ : InspectOutfile
• recursion_depth_ : ProgressLogger
• reduce_by_factor_ : ParentPeakMower
• reestimate_mt_sd_ : MassTraceDetection
• ref : HierarchicalClustering< PointRef >::TreeNode
• ref_ : PrecisionWrapper< FloatingPointType >
• ref_intens : IsotopeWaveletTransform< PeakType >::BoxElement
• ref_param_ : MzMLHandler< MapType >
• reference_ : MapAlignmentAlgorithmIdentification , MapAlignmentAlgorithmPoseClustering , IsotopeWaveletTransform< PeakType >::TransSpectrum
• reference_index_ : MapAlignmentAlgorithmIdentification
• refine_ : XTandemInfile
• refine_max_valid_evalue_ : XTandemInfile
• reflectron_state_ : MassAnalyzer , MassAnalyzerVisualizer
• reg_models : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
• region_ : SimpleExtender< PeakType, FeatureType >
• region_rt_span_ : EGHTraceFitter< PeakType > , GaussTraceFitter< PeakType >
• registered_at_ : LogStreamNotifier
• registry_ : MetaInfo
• reindexed_peptides : ProteinResolver::ResolverResult
• reindexed_proteins : ProteinResolver::ResolverResult
• rel_error_ : LevMarqFitter1D
• rel_prec_error : RNPxlReportRow
• relative_peak_position : SILACFiltering::BlacklistEntry
• relevant : FeatureDistance::DistanceParams_
• reliability : MzTabProteinSectionRow , MzTabPeptideSectionRow , MzTabSmallMoleculeSectionRow
• reliability_score_ : MzTabModification
• remove_precursor_near_peaks_ : SequestInfile
• removebutton_ : GradientVisualizer
• removeRowButton_ : ListEditor
• replacement_ : SVOutStream
• report_summed_ints_ : FeatureFindingMetabo
• reported_mz_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• require_args_ : TOPPBase
• required : ParameterInformation
• requirement_level_ : CVMappingRule
• res_ : IonDetectorVisualizer , MassAnalyzerVisualizer
• res_base_ : RawMSSignalSimulation
• res_method_ : MassAnalyzerVisualizer
• res_model_ : RawMSSignalSimulation
• res_type_ : MassAnalyzerVisualizer
• residue : SvmTheoreticalSpectrumGenerator::IonType
• residue_mod_names_ : ResidueDB
• residue_names_ : ResidueDB
• residue_sets_ : Residue , ResidueDB
• residue_to_name_ : CompNovoIdentificationBase
• residues_ : ResidueDB
• residues_by_set_ : ResidueDB
• residues_in_upper_case_ : SequestInfile
• resolution_ : IonDetector , MassAnalyzer
• resolution_method_ : MassAnalyzer
• resolution_type_ : MassAnalyzer
• resolver_result_ : ProteinResolver
• restrictions : ParamXMLHandler
• restrictions_ : ListEditorDelegate
• restrictions_index : ParamXMLHandler
• result_ : DBOpenDialog
• results_path_ : MascotRemoteQuery
• resume_source_ : TOPPASScene
• retention_ : EGHFitter1D , EmgFitter1D , EmgModel
• retention_time : MzTabPeptideSectionRow , MzTabSmallMoleculeSectionRow
• retention_time_ : MascotInfile , MSSpectrum< PeakT >
• reverse_ : InPrecursorMZRange< SpectrumType > , HasScanMode< SpectrumType > , HasMetaValue< MetaContainer > , InRTRange< SpectrumType > , InMSLevelRange< SpectrumType > , IsEmptySpectrum< SpectrumType > , IsZoomSpectrum< SpectrumType > , HasActivationMethod< SpectrumType > , HasPrecursorCharge< SpectrumType > , InMzRange< PeakType > , InIntensityRange< PeakType >
• right : HierarchicalClustering< PointRef >::TreeNode , HierarchicalClustering< PointRef >::TreeDistance , PeakPickerCWT::PeakArea_
• right_child : BinaryTreeNode
• right_endpoint_ : PeakShape
• right_iterator_set_ : PeakShape
• right_splitter_ : HistogramWidget
• right_width : PeakShape
• RNA : RNPxlReportRow
• RNA_weight : RNPxlReportRow
• rnd_gen_ : RawTandemMSSignalSimulation , IonizationSimulation , RawMSSignalSimulation , RTSimulation
• rng_ : BaseLabeler
• root_ : Param::ParamIterator , Param
• round_based_mode_ : TOPPASMergerVertex
• round_counter_ : TOPPASVertex
• round_total_ : TOPPASVertex
• rounding_errors_ : RealMassDecomposer
• row_ : QcMLFile , BaseVisualizerGUI
• rownames_ : DataMatrix
• rows_ : Matrix< Value >
• rsd_ : LinearRegression
• rt : LightPeptide , Peptide , SILACPoint , RNPxlReportRow
• RT : SpectrumMeta , IsotopeWaveletTransform< PeakType >::BoxElement , FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >::BoxElement
• rt_ : PepXMLFile
• rt_bridge_ : InclusionExclusionList::WindowDistance_
• rt_calibrated : TransitionTSVReader::TSVTransition
• rt_end : RawMSSignalSimulation::ContaminantInfo
• rt_extraction_window_ : MRMFeatureFinderScoring
• RT_index : IsotopeWaveletTransform< PeakType >::BoxElement
• rt_input_data_ : ModelFitter< PeakType, FeatureType >
• RT_interleave_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
• rt_label_ : TOPPViewBase
• rt_mapping_ : MascotXMLHandler
• rt_max_ : SpectraMerger::SpectraDistance_
• rt_max_spacing : SILACClustering
• rt_min : SILACClustering
• rt_model_file_ : RTSimulation
• rt_normalization_factor_ : MRMFeatureFinderScoring
• rt_probability : PSLPFormulation::IndexTriple
• rt_prot_map_ : PrecursorIonSelectionPreprocessing
• rt_range_ : PeakFileOptions , FeatureFileOptions
• rt_sampling_rate_ : RTSimulation
• rt_shift_ : Compomer , Adduct
• rt_start : RawMSSignalSimulation::ContaminantInfo
• rt_stat_ : ModelFitter< PeakType, FeatureType >
• rt_tol_ : PepXMLFile
• rt_tolerance_ : IDMapper
• RT_votes_cutoff_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
• RTmax_ : InclusionExclusionList::IEWindow
• RTmin_ : InclusionExclusionList::IEWindow
• rts : ReactionMonitoringTransition , Peptide , Compound
• rts_ : IncludeExcludeTarget
• rubber_band_ : SpectrumCanvas
• rules_ : CVMappingFile , SemanticValidator
• running_ : TOPPASScene
• running_avg_ : SimpleExtender< PeakType, FeatureType >
• runQualityAts_ : QcMLFile
• runQualityQPs_ : QcMLFile
• rWidth : PenaltyFactors