- g -

• generateTargetSequences() : RNPxl.C

- i -

• initModificationMassesRNA() : RNPxl.C

- m -

• main() : AdditiveSeries.C , TOPPView.C , TOPPAS.C , INIFileEditor.C , RNPxlXICFilter.C , RNPxl.C , INIUpdater.C , IDDecoyProbability.C , SpectraFilterWindowMower.C , SpectraFilterThresholdMower.C , SpectraFilterSqrtMower.C , SpectraFilterScaler.C , SpectraFilterParentPeakMower.C , SpectraFilterNormalizer.C , SpectraFilterNLargest.C , SpectraFilterMarkerMower.C , SpectraFilterBernNorm.C , SILACAnalyzer.C , PILISSpectraGenerator.C , PILISModelTrainer.C , PILISModelCV.C , PILISIdentification.C , PhosphoScoring.C , InspectAdapter.C , HighResPrecursorMassCorrector.C , GenericWrapper.C , FeatureFinderRaw.C , FalseDiscoveryRate.C , DTAExtractor.C , DBImporter.C , DBExporter.C , CompNovoCID.C , CompNovo.C

- n -

• notInSeq() : RNPxl.C

- p -

• print_usage() : TOPPAS.C , TOPPView.C

- s -

• SortDoubleDoublePairFirst() : MRMFeatureFinderScoring.h