seqan Namespace Reference

Classes
struct	FoundProteinFunctor
struct	SAValue< Index< StringSet< Peptide >, IndexWotd<> > >
struct	EquivalenceClassAA_
Functions
template<bool enumerateA, bool enumerateB, typename TOnFoundFunctor , typename TTreeIteratorA , typename TIterPosA , typename TTreeIteratorB , typename TIterPosB , typename TErrors >
void	_approximateAminoAcidTreeSearch (TOnFoundFunctor &onFoundFunctor, TTreeIteratorA iterA, TIterPosA iterPosA, TTreeIteratorB iterB_, TIterPosB iterPosB, TErrors errorsLeft, TErrors classErrorsLeft)
template<typename TEquivalenceTable >
bool	_charComparator (AminoAcid charA, AminoAcid charB, TEquivalenceTable equivalence)

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Function Documentation

void seqan::_approximateAminoAcidTreeSearch	(	TOnFoundFunctor &	onFoundFunctor,
		TTreeIteratorA	iterA,
		TIterPosA	iterPosA,
		TTreeIteratorB	iterB_,
		TIterPosB	iterPosB,
		TErrors	errorsLeft,
		TErrors	classErrorsLeft
	)			[inline]

References _charComparator().

bool seqan::_charComparator	(	AminoAcid	charA,
		AminoAcid	charB,
		TEquivalenceTable	equivalence
	)			[inline]

Referenced by _approximateAminoAcidTreeSearch().