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Public Member Functions | Protected Attributes

MzTabModification Struct Reference

#include <OpenMS/FORMAT/MzTab.h>

Inheritance diagram for MzTabModification:
MzTabNAAbleInterface

List of all members.

Public Member Functions

 MzTabModification ()
bool isNA () const
void setNA (bool na)
void setPosition (Int index)
void setReliabilityScore (DoubleReal score)
void setModIdentifier (String mod_id)
Int getPosition () const
DoubleReal getReliabilityScore () const
String getModIdentifier () const
String toCellString () const
void fromCellString (String s)

Protected Attributes

Int position_
DoubleReal reliability_score_
String mod_identifier_

Constructor & Destructor Documentation

MzTabModification (  )  [inline]

Member Function Documentation

void fromCellString ( String  s  )  [inline, virtual]

Implements MzTabNAAbleInterface.

References String::hasSubstring(), MzTabModification::mod_identifier_, MzTabModification::position_, MzTabModification::reliability_score_, String::remove(), MzTabModification::setNA(), String::split(), String::toDouble(), String::toInt(), String::toUpper(), and String::trim().

Referenced by MzTabModificationList::fromCellString().

String getModIdentifier (  )  const [inline]

References MzTabModification::isNA(), and MzTabModification::mod_identifier_.

Int getPosition (  )  const [inline]

References MzTabModification::isNA(), and MzTabModification::position_.

DoubleReal getReliabilityScore (  )  const [inline]

References MzTabModification::isNA(), and MzTabModification::reliability_score_.

bool isNA (  )  const [inline, virtual]

Implements MzTabNAAbleInterface.

References MzTabModification::mod_identifier_, MzTabModification::position_, and MzTabModification::reliability_score_.

Referenced by MzTabModification::getModIdentifier(), MzTabModification::getPosition(), MzTabModification::getReliabilityScore(), and MzTabModification::toCellString().

void setModIdentifier ( String  mod_id  )  [inline]

References MzTabModification::mod_identifier_.

void setNA ( bool  na  )  [inline, virtual]

Implements MzTabNAAbleInterface.

References MzTabModification::mod_identifier_, MzTabModification::position_, and MzTabModification::reliability_score_.

Referenced by MzTabModification::fromCellString().

void setPosition ( Int  index  )  [inline]

References MzTabModification::position_.

void setReliabilityScore ( DoubleReal  score  )  [inline]

References MzTabModification::reliability_score_.

String toCellString (  )  const [inline, virtual]

Implements MzTabNAAbleInterface.

References MzTabModification::isNA(), MzTabModification::mod_identifier_, MzTabModification::position_, and MzTabModification::reliability_score_.

Member Data Documentation

String mod_identifier_ [protected]

Referenced by MzTabModification::fromCellString(), MzTabModification::getModIdentifier(), MzTabModification::isNA(), MzTabModification::setModIdentifier(), MzTabModification::setNA(), and MzTabModification::toCellString().

Int position_ [protected]

Referenced by MzTabModification::fromCellString(), MzTabModification::getPosition(), MzTabModification::isNA(), MzTabModification::setNA(), MzTabModification::setPosition(), and MzTabModification::toCellString().

DoubleReal reliability_score_ [protected]

Referenced by MzTabModification::fromCellString(), MzTabModification::getReliabilityScore(), MzTabModification::isNA(), MzTabModification::setNA(), MzTabModification::setReliabilityScore(), and MzTabModification::toCellString().

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:54 using doxygen 1.7.1