OpenSwath_Scores Struct Reference

A structure to hold the different scores computed by the FeatureFinder. More...

#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h>

List of all members.

Public Member Functions
double	get_quick_lda_score (double library_corr, double library_rmsd, double norm_rt_score, double xcorr_coelution_score, double xcorr_shape_score, double log_sn_score)
double	calculate_lda_prescore (OpenSwath_Scores scores)
double	calculate_swath_lda_prescore (OpenSwath_Scores scores)
Public Attributes
double	elution_model_fit_score
double	library_corr
double	library_rmsd
double	norm_rt_score
double	isotope_correlation
double	isotope_overlap
double	massdev_score
double	xcorr_coelution_score
double	xcorr_shape_score
double	yseries_score
double	log_sn_score

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Detailed Description

A structure to hold the different scores computed by the FeatureFinder.

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Member Function Documentation

double calculate_lda_prescore

(

OpenSwath_Scores

scores

)

[inline]

References OpenSwath_Scores::elution_model_fit_score, OpenSwath_Scores::library_corr, OpenSwath_Scores::library_rmsd, OpenSwath_Scores::log_sn_score, OpenSwath_Scores::norm_rt_score, OpenSwath_Scores::xcorr_coelution_score, and OpenSwath_Scores::xcorr_shape_score.

Referenced by MRMFeatureFinderScoring::scorePeakgroups_().

double calculate_swath_lda_prescore

(

OpenSwath_Scores

scores

)

[inline]

References OpenSwath_Scores::isotope_correlation, OpenSwath_Scores::isotope_overlap, OpenSwath_Scores::library_corr, OpenSwath_Scores::library_rmsd, OpenSwath_Scores::log_sn_score, OpenSwath_Scores::massdev_score, OpenSwath_Scores::norm_rt_score, OpenSwath_Scores::xcorr_coelution_score, OpenSwath_Scores::xcorr_shape_score, and OpenSwath_Scores::yseries_score.

Referenced by MRMFeatureFinderScoring::calculateSwathScores_().

double get_quick_lda_score	(	double	library_corr,
		double	library_rmsd,
		double	norm_rt_score,
		double	xcorr_coelution_score,
		double	xcorr_shape_score,
		double	log_sn_score
	)			[inline]

Referenced by MRMFeatureFinderScoring::scorePeakgroups_().

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Member Data Documentation

double elution_model_fit_score

Referenced by OpenSwath_Scores::calculate_lda_prescore(), and MRMFeatureFinderScoring::scorePeakgroups_().

double isotope_correlation

Referenced by OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::calculateSwathScores_().

double isotope_overlap

Referenced by OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::calculateSwathScores_().

double library_corr

Referenced by OpenSwath_Scores::calculate_lda_prescore(), OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::scorePeakgroups_().

double library_rmsd

Referenced by OpenSwath_Scores::calculate_lda_prescore(), OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::scorePeakgroups_().

double log_sn_score

Referenced by OpenSwath_Scores::calculate_lda_prescore(), OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::scorePeakgroups_().

double massdev_score

Referenced by OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::calculateSwathScores_().

double norm_rt_score

Referenced by OpenSwath_Scores::calculate_lda_prescore(), OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::scorePeakgroups_().

double xcorr_coelution_score

Referenced by OpenSwath_Scores::calculate_lda_prescore(), OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::scorePeakgroups_().

double xcorr_shape_score

Referenced by OpenSwath_Scores::calculate_lda_prescore(), OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::scorePeakgroups_().

double yseries_score

Referenced by OpenSwath_Scores::calculate_swath_lda_prescore(), and MRMFeatureFinderScoring::calculateSwathScores_().