Class for the penalty factors used during the optimization. More...
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePick.h>
Public Member Functions | |
| PenaltyFactors () | |
| PenaltyFactors (const PenaltyFactors &p) | |
| PenaltyFactors & | operator= (const PenaltyFactors &p) |
| ~PenaltyFactors () | |
Public Attributes | |
| double | pos |
| Penalty factor for the peak shape's position. | |
| double | lWidth |
| Penalty factor for the peak shape's left width parameter. | |
| double | rWidth |
| Penalty factor for the peak shape's right width parameter. | |
Detailed Description
Class for the penalty factors used during the optimization.
A great deviation (squared deviation) of a peak shape's position or its left or right width parameter can be penalised. In each iteration the penalty (for each peak shape) is computed by: penalty = penalty_pos * pow(p_position - old_position, 2) + penalty_lwidth * pow(p_width_l - old_width_l, 2) + penalty_rwidth * pow(p_width_r - old_width_r, 2);
Constructor & Destructor Documentation
| PenaltyFactors | ( | ) | [inline] |
| PenaltyFactors | ( | const PenaltyFactors & | p | ) | [inline] |
| ~PenaltyFactors | ( | ) | [inline] |
Member Function Documentation
| PenaltyFactors& operator= | ( | const PenaltyFactors & | p | ) | [inline] |
References PenaltyFactors::lWidth, PenaltyFactors::pos, and PenaltyFactors::rWidth.
Member Data Documentation
Penalty factor for the peak shape's left width parameter.
Referenced by PenaltyFactors::operator=(), PenaltyFactorsIntensity::operator=(), TwoDOptimization::optimizeRegionsScanwise_(), and TwoDOptimization::setPenalties().
Penalty factor for the peak shape's position.
Referenced by PenaltyFactors::operator=(), PenaltyFactorsIntensity::operator=(), TwoDOptimization::optimizeRegionsScanwise_(), and TwoDOptimization::setPenalties().
Penalty factor for the peak shape's right width parameter.
Referenced by PenaltyFactors::operator=(), PenaltyFactorsIntensity::operator=(), TwoDOptimization::optimizeRegionsScanwise_(), and TwoDOptimization::setPenalties().
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:43:00 using doxygen 1.7.1 |