OpenMS: ProteinIdentification::SearchParameters Struct Reference

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Search parameters of the DB search. More...

#include <OpenMS/METADATA/ProteinIdentification.h>

Inheritance diagram for ProteinIdentification::SearchParameters:

List of all members.

Public Member Functions
	SearchParameters ()
bool	operator== (const SearchParameters &rhs) const
bool	operator!= (const SearchParameters &rhs) const
Public Attributes
String	db
	The used database.
String	db_version
	The database version.
String	taxonomy
	The taxonomy restriction.
String	charges
	The allowed charges for the search.
PeakMassType	mass_type
	Mass type of the peaks.
std::vector< String >	fixed_modifications
	Used fixed modifications.
std::vector< String >	variable_modifications
	Allowed variable modifications.
DigestionEnzyme	enzyme
	The enzyme used for cleavage.
UInt	missed_cleavages
	The number of allowed missed cleavages.
DoubleReal	peak_mass_tolerance
	Mass tolerance of fragment ions (Dalton).
DoubleReal	precursor_tolerance
	Mass tolerance of precursor ions (Dalton).

Detailed Description

Search parameters of the DB search.

Constructor & Destructor Documentation

SearchParameters ( ) [inline]

Member Function Documentation

bool operator!= ( const SearchParameters & rhs ) const [inline]

bool operator== ( const SearchParameters & rhs ) const [inline]

References ProteinIdentification::SearchParameters::charges, ProteinIdentification::SearchParameters::db, ProteinIdentification::SearchParameters::db_version, ProteinIdentification::SearchParameters::enzyme, ProteinIdentification::SearchParameters::fixed_modifications, ProteinIdentification::SearchParameters::mass_type, ProteinIdentification::SearchParameters::missed_cleavages, ProteinIdentification::SearchParameters::peak_mass_tolerance, ProteinIdentification::SearchParameters::precursor_tolerance, ProteinIdentification::SearchParameters::taxonomy, and ProteinIdentification::SearchParameters::variable_modifications.

Member Data Documentation

The allowed charges for the search.

Referenced by ProteinIdentification::SearchParameters::operator==().

The used database.

Referenced by ProteinIdentification::SearchParameters::operator==().

String db_version

The database version.

Referenced by ProteinIdentification::SearchParameters::operator==().

DigestionEnzyme enzyme

The enzyme used for cleavage.

Referenced by ProteinIdentification::SearchParameters::operator==().

std::vector<String> fixed_modifications

Used fixed modifications.

Referenced by ProteinIdentification::SearchParameters::operator==().

PeakMassType mass_type

Mass type of the peaks.

Referenced by ProteinIdentification::SearchParameters::operator==().

UInt missed_cleavages

The number of allowed missed cleavages.

Referenced by ProteinIdentification::SearchParameters::operator==().

DoubleReal peak_mass_tolerance

Mass tolerance of fragment ions (Dalton).

Referenced by ProteinIdentification::SearchParameters::operator==().

DoubleReal precursor_tolerance

Mass tolerance of precursor ions (Dalton).

Referenced by ProteinIdentification::SearchParameters::operator==().

String taxonomy

The taxonomy restriction.

Referenced by ProteinIdentification::SearchParameters::operator==().

std::vector<String> variable_modifications

Allowed variable modifications.

Referenced by ProteinIdentification::SearchParameters::operator==().

OpenMS / TOPP release 1.10.0

Documentation generated on Thu Mar 7 2013 09:42:56 using doxygen 1.7.1